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Report for Sequence Feature Glyma18g42280

Feature Type:gene_model
Chromosome:Gm18
Start:51289833
stop:51295753
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G38040AT Annotation by Michelle Graham. TAIR10: acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit | chr2:15917612-15920749 FORWARD LENGTH=769 SoyBaseE_val: 0ISS
GO:0006633GO-bp Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process SoyBaseN/AISS
GO:0006744GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process SoyBaseN/AISS
GO:0009317GO-cc Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009536GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plastid SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009941GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0003989GO-mf Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity SoyBaseN/AISS
GO:0016874GO-mf Annotation by Michelle Graham. GO Molecular Function: ligase activity SoyBaseN/AISS
PTHR22855Panther ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED JGI ISS
PTHR22855:SF3Panther ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE ALPHA JGI ISS
PF03255PFAM Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JGI ISS
UniRef100_I1N2T5UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2T5_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9LLR0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl transferase alpha subunit n=1 Tax=Glycine max RepID=Q9LLR0_SOYBN SoyBaseE_val: 0ISS

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection
Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g195700 Wm82.a2.v1IGC As supplied by JGI

Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

>Glyma18g42280.1   sequence type=CDS   gene model=Glyma18g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCTTCTGCATCTCTTTCTGGTGCTTCTGCTTCGGATCTTCTGAGGAGTTCAACCAGCGGTTTCAATGGTGTTCCTTTGAGAACCATGGGGAAGGGAAAGTTGGTTTTGAAGAGGAGGAACTTTACAGTTGCTGCCAGGCTGAGGAAGGTGAAGAAGCATGAATATCCTTGGCCTCCTAACCCTGATCCCAATGTGAAAGGTGGGGTGCTGAGCCACCTTTCCTTGTTCAAGCCACTCAAGGAGAAGCCAAAGCCTGTCACTTTGGATTTTGAAAGGCCTCTTGTTGATCTGCAAAAGAAGATCATTGATGTACAGAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGACCAAGTACCACCAGGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTGTTTAACATAACTGAAAAGTTTGTTGAACTCCATGGTGATCGGGCAGGTTACGATGATCCTGCTATTGTTACTGGTCTAGGGACTATAGATGGTAGAAGCTACATGTTCATTGGTCACCAAAAGGGTAGAAATACTAAAGAAAATATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGTTACAGGAAGGCCCTTCGCTTGATGGAATATGCAGATCATCATGGGTTCCCCATAGTTACTTTCATTGACACGCCTGGGGCATATGCTGACCTTAAATCAGAGGAACTAGGACAGGGTGAAGCGATTGCTCACAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATATCTATAGTTATTGGAGAAGGTGGTTCAGGTGGCGCCCTAGCCATTGGATGTGCTAATAAATTACTCATGCTTGAAAATGCTGTTTTTTATGTTGCCAGTCCAGAGGCATGTGCAGCAATCTTGTGGAAGACAGCTAAAGCTTCTCCAAAGGCTGCTGAGAAATTGAAGATTACAGCCACTGAACTGTGCAAATTACAAATTGCAGATGGTGTTATACCTGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGATGAGCTCACGAAGATGAACACAGAAGAACTGTTAAAACATCGCATGCTTAAGTTCAGAAAGATTGGTGGGTTCCAGGAAGGTATTCCTATAGATCCTAAGAGAAAAGCCAACATGAAGAAGAGGGATCTATCTATTGCTAAGATTCCTGATGCTGAACTAGAAGTTGAGGTTGAGAAACTGAAGCAACAGGTTTTGGAAGCTAAGGAATCTTCTCCTGTTCCTCCAAAACTAGATCTGGATGAGATGCTAAAGCAACTGGCAAGGGAGGTCGATCTAGAATACTCTGAGGCAGTTAAAGCCACGGGCTTGACAGACAGTTTGTTGAAACTAAGGGAGGAAGTTTCGAAAGCAAATGCAGATAATCAAATTGTTGATCCATTGCTGGAGGGTAAGATAGAAAAGCTAAGGGTGGAGTTTGAACAGCAATTGCGTGCAGCTCCCAATTATGGTAGGCTGCAGAATAAGCTTAACTATCTGAGCGAATTATGTAAAGTAAAGCTTCTGTCAGATGGAAAGAAGGACAATGAGGCTGTCACATTTAAGCAAGAGTTGAAGAAAAAAATTGATAATGCCTTGAGTGATCCAAAAATAAGGGAGACATTTGAAGCATTAAAGGCTGAAATTAAAGGTGTTGGTGCATCCTCAGCAAGTGATTTGGATGACGAGTTGAAGAAGAAAATCATTGAGTTTATCAAAGAAGTAAAAGAAGTAAAAGAAGTAAAAGAGGTAATAGAAAATCAAATTGAAAGTTTGGTAAACTCGTCGGATGATATTAAGAGCAAGATACTGCAATTGAAATTGGAGGTTCCTAAGGCTGGAGAGACGCCTGATTCAGAACCAAAGAATAGAATTGGTGCTCTGGTGCAACTAATTAAGCCGAGCCTAGTGGAGGCCGTTGACTCGTCTGGCTTAAAAGATCTGTTTGAAAATCTGGTGTCTAATGATGGAAGTTTGACACATGAAGATCCAGCTAGAGACAGTCTCACCGATGACCAGTAG

>Glyma18g42280.1   sequence type=predicted peptide   gene model=Glyma18g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSASLSGASASDLLRSSTSGFNGVPLRTMGKGKLVLKRRNFTVAARLRKVKKHEYPWPPNPDPNVKGGVLSHLSLFKPLKEKPKPVTLDFERPLVDLQKKIIDVQKMANETGLDFSDQILSLETKYHQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGLGTIDGRSYMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSMFGLKVPVISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAIKETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEVEVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVDLEYSEAVKATGLTDSLLKLREEVSKANADNQIVDPLLEGKIEKLRVEFEQQLRAAPNYGRLQNKLNYLSELCKVKLLSDGKKDNEAVTFKQELKKKIDNALSDPKIRETFEALKAEIKGVGASSASDLDDELKKKIIEFIKEVKEVKEVKEVIENQIESLVNSSDDIKSKILQLKLEVPKAGETPDSEPKNRIGALVQLIKPSLVEAVDSSGLKDLFENLVSNDGSLTHEDPARDSLTDDQ*







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