Glyma18g42280 - SoyBase

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Report for Sequence Feature Glyma18g42280

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51289833
stop:	51295753
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42280

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G38040	AT	Annotation by Michelle Graham. TAIR10: acetyl Co-enzyme a carboxylase carboxyltransferase alpha subunit \| chr2:15917612-15920749 FORWARD LENGTH=769	SoyBase	E_val: 0	ISS
GO:0006633	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid biosynthetic process	SoyBase	N/A	ISS
GO:0006744	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquinone biosynthetic process	SoyBase	N/A	ISS
GO:0009317	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: acetyl-CoA carboxylase complex	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003989	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetyl-CoA carboxylase activity	SoyBase	N/A	ISS
GO:0016874	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ligase activity	SoyBase	N/A	ISS
PTHR22855	Panther	ACETYL, PROPIONYL, PYRUVATE, AND GLUTACONYL CARBOXYLASE-RELATED	JGI		ISS
PTHR22855:SF3	Panther	ACETYL-COENZYME A CARBOXYLASE CARBOXYL TRANSFERASE ALPHA	JGI		ISS
PF03255	PFAM	Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit	JGI		ISS
UniRef100_I1N2T5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2T5_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LLR0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Carboxyl transferase alpha subunit n=1 Tax=Glycine max RepID=Q9LLR0_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g42280

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42280 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g195700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42280

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42280

Limit To All Plant Sequences

>Glyma18g42280.1   sequence type=CDS   gene model=Glyma18g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCTTCTTCTGCATCTCTTTCTGGTGCTTCTGCTTCGGATCTTCTGAGGAGTTCAACCAGCGGTTTCAATGGTGTTCCTTTGAGAACCATGGGGAAGGGAAAGTTGGTTTTGAAGAGGAGGAACTTTACAGTTGCTGCCAGGCTGAGGAAGGTGAAGAAGCATGAATATCCTTGGCCTCCTAACCCTGATCCCAATGTGAAAGGTGGGGTGCTGAGCCACCTTTCCTTGTTCAAGCCACTCAAGGAGAAGCCAAAGCCTGTCACTTTGGATTTTGAAAGGCCTCTTGTTGATCTGCAAAAGAAGATCATTGATGTACAGAAGATGGCGAACGAAACTGGACTGGACTTCAGTGATCAGATTCTCTCATTGGAGACCAAGTACCACCAGGCTTTAAAGGATCTGTATACGCATCTGACTCCTATTCAGCGGGTCAACATCGCACGGCACCCTAACAGGCCAACTTTCCTTGATCATGTGTTTAACATAACTGAAAAGTTTGTTGAACTCCATGGTGATCGGGCAGGTTACGATGATCCTGCTATTGTTACTGGTCTAGGGACTATAGATGGTAGAAGCTACATGTTCATTGGTCACCAAAAGGGTAGAAATACTAAAGAAAATATTCAGCGTAACTTTGGGATGCCAACTCCTCATGGTTACAGGAAGGCCCTTCGCTTGATGGAATATGCAGATCATCATGGGTTCCCCATAGTTACTTTCATTGACACGCCTGGGGCATATGCTGACCTTAAATCAGAGGAACTAGGACAGGGTGAAGCGATTGCTCACAATTTGAGATCCATGTTTGGTCTGAAGGTGCCAGTTATATCTATAGTTATTGGAGAAGGTGGTTCAGGTGGCGCCCTAGCCATTGGATGTGCTAATAAATTACTCATGCTTGAAAATGCTGTTTTTTATGTTGCCAGTCCAGAGGCATGTGCAGCAATCTTGTGGAAGACAGCTAAAGCTTCTCCAAAGGCTGCTGAGAAATTGAAGATTACAGCCACTGAACTGTGCAAATTACAAATTGCAGATGGTGTTATACCTGAGCCACTTGGTGGTGCACATGCAGATCCAGAGTGGACCTCTCAACAGATAAAAAAGGCTATCAAAGAAACCATGGATGAGCTCACGAAGATGAACACAGAAGAACTGTTAAAACATCGCATGCTTAAGTTCAGAAAGATTGGTGGGTTCCAGGAAGGTATTCCTATAGATCCTAAGAGAAAAGCCAACATGAAGAAGAGGGATCTATCTATTGCTAAGATTCCTGATGCTGAACTAGAAGTTGAGGTTGAGAAACTGAAGCAACAGGTTTTGGAAGCTAAGGAATCTTCTCCTGTTCCTCCAAAACTAGATCTGGATGAGATGCTAAAGCAACTGGCAAGGGAGGTCGATCTAGAATACTCTGAGGCAGTTAAAGCCACGGGCTTGACAGACAGTTTGTTGAAACTAAGGGAGGAAGTTTCGAAAGCAAATGCAGATAATCAAATTGTTGATCCATTGCTGGAGGGTAAGATAGAAAAGCTAAGGGTGGAGTTTGAACAGCAATTGCGTGCAGCTCCCAATTATGGTAGGCTGCAGAATAAGCTTAACTATCTGAGCGAATTATGTAAAGTAAAGCTTCTGTCAGATGGAAAGAAGGACAATGAGGCTGTCACATTTAAGCAAGAGTTGAAGAAAAAAATTGATAATGCCTTGAGTGATCCAAAAATAAGGGAGACATTTGAAGCATTAAAGGCTGAAATTAAAGGTGTTGGTGCATCCTCAGCAAGTGATTTGGATGACGAGTTGAAGAAGAAAATCATTGAGTTTATCAAAGAAGTAAAAGAAGTAAAAGAAGTAAAAGAGGTAATAGAAAATCAAATTGAAAGTTTGGTAAACTCGTCGGATGATATTAAGAGCAAGATACTGCAATTGAAATTGGAGGTTCCTAAGGCTGGAGAGACGCCTGATTCAGAACCAAAGAATAGAATTGGTGCTCTGGTGCAACTAATTAAGCCGAGCCTAGTGGAGGCCGTTGACTCGTCTGGCTTAAAAGATCTGTTTGAAAATCTGGTGTCTAATGATGGAAGTTTGACACATGAAGATCCAGCTAGAGACAGTCTCACCGATGACCAGTAG

Predicted protein sequences of Glyma18g42280

Limit To All Plant Sequences

>Glyma18g42280.1   sequence type=predicted peptide   gene model=Glyma18g42280   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAASSASLSGASASDLLRSSTSGFNGVPLRTMGKGKLVLKRRNFTVAARLRKVKKHEYPWPPNPDPNVKGGVLSHLSLFKPLKEKPKPVTLDFERPLVDLQKKIIDVQKMANETGLDFSDQILSLETKYHQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFNITEKFVELHGDRAGYDDPAIVTGLGTIDGRSYMFIGHQKGRNTKENIQRNFGMPTPHGYRKALRLMEYADHHGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRSMFGLKVPVISIVIGEGGSGGALAIGCANKLLMLENAVFYVASPEACAAILWKTAKASPKAAEKLKITATELCKLQIADGVIPEPLGGAHADPEWTSQQIKKAIKETMDELTKMNTEELLKHRMLKFRKIGGFQEGIPIDPKRKANMKKRDLSIAKIPDAELEVEVEKLKQQVLEAKESSPVPPKLDLDEMLKQLAREVDLEYSEAVKATGLTDSLLKLREEVSKANADNQIVDPLLEGKIEKLRVEFEQQLRAAPNYGRLQNKLNYLSELCKVKLLSDGKKDNEAVTFKQELKKKIDNALSDPKIRETFEALKAEIKGVGASSASDLDDELKKKIIEFIKEVKEVKEVKEVIENQIESLVNSSDDIKSKILQLKLEVPKAGETPDSEPKNRIGALVQLIKPSLVEAVDSSGLKDLFENLVSNDGSLTHEDPARDSLTDDQ*

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