Glyma18g42255 - SoyBase

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Report for Sequence Feature Glyma18g42255

Feature Type:	gene_model
Chromosome:	Gm18
Start:	51284449
stop:	51284961
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g42255

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G11755	AT	Annotation by Michelle Graham. TAIR10: Undecaprenyl pyrophosphate synthetase family protein \| chr1:3969987-3971488 REVERSE LENGTH=254	SoyBase	E_val: 3.00E-22	ISS
PTHR21528	Panther	UNCHARACTERIZED	JGI		ISS
UniRef100_G7K553	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nogo-B receptor n=1 Tax=Medicago truncatula RepID=G7K553_MEDTR	SoyBase	E_val: 6.00E-50	ISS
UniRef100_UPI000233E551	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E551 related cluster n=1 Tax=unknown RepID=UPI000233E551	SoyBase	E_val: 4.00E-83	ISS

Expression Patterns of Glyma18g42255

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42255 not represented in the dataset	Glyma18g42255 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42255 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g195600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g42255

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g42255

Limit To All Plant Sequences

>Glyma18g42255.1   sequence type=CDS   gene model=Glyma18g42255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGTCCTTCACATCATTCACAGAGGAAGAGAAAGATAAGGCCATCAGCATTAACTCAGTGCAGGAAGTTAATGAAGTTGTCGCACTCCATGATCCAGATCACATGACTTTAAAATTTCTTTCTCATGCGGATGGGAGAGAGGCAGTGGCCAAAGCAGCTAACTTGATTTTTGTGGAGAACATGAAGCAACATAAATTGGGTGGAGAACTAGATCTTCAAATCCTTTTAGAACCTCAATTGAATAAAGCATTGCAAATTGTTGGTAGCAAAGGTCCTGAGCCTGGCCTTTTATTGGTTTATGGACCTGTGAGGAGCCATCTTGGTTTTCCTGCATGGAGACTTCGTTACACAGAGATCATGTAA

Predicted protein sequences of Glyma18g42255

Limit To All Plant Sequences

>Glyma18g42255.1   sequence type=predicted peptide   gene model=Glyma18g42255   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSFTSFTEEEKDKAISINSVQEVNEVVALHDPDHMTLKFLSHADGREAVAKAANLIFVENMKQHKLGGELDLQILLEPQLNKALQIVGSKGPEPGLLLVYGPVRSHLGFPAWRLRYTEIM*

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