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Report for Sequence Feature Glyma18g42217

Feature Type:gene_model
Chromosome:Gm18
Start:51227100
stop:51231840
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42217
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G54110AT Annotation by Michelle Graham. TAIR10: plant uncoupling mitochondrial protein 1 | chr3:20038890-20040996 FORWARD LENGTH=306 SoyBaseE_val: 5.00E-179ISS
GO:0006007GO-bp Annotation by Michelle Graham. GO Biological Process: glucose catabolic process SoyBaseN/AISS
GO:0006810GO-bp Annotation by Michelle Graham. GO Biological Process: transport SoyBaseN/AISS
GO:0006839GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrial transport SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0015979GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005743GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial inner membrane SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0031966GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrial membrane SoyBaseN/AISS
GO:0017077GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidative phosphorylation uncoupler activity SoyBaseN/AISS
KOG0753 KOG Mitochondrial fatty acid anion carrier protein/Uncoupling protein JGI ISS
PTHR24089Panther FAMILY NOT NAMED JGI ISS
PTHR24089:SF28Panther SUBFAMILY NOT NAMED JGI ISS
PF00153PFAM Mitochondrial carrier protein JGI ISS
UniRef100_G7JR69UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial uncoupling protein n=2 Tax=Medicago truncatula RepID=G7JR69_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F120UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F120 related cluster n=1 Tax=unknown RepID=UPI000233F120 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g42217
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42217 not represented in the dataset
Glyma18g42217 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g42217
ParalogEvidenceComments
Glyma07g17380 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g42217 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g195400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g42217
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g42217
>Glyma18g42217.2   sequence type=transcript   gene model=Glyma18g42217   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTATTGTATATAAGAAATAAGAGAGTATTTTTCATATATTATATAGATTCGCTTATTTAACAAAAGAGTTAGTATAAGAATTCCTCTGCCTTGTCTTGAACTTCACTGTCGTTACGCCAAACACCATTTTTTTTTCTCTTCCTCTGAAGCCATTTTTTCTTCCTTCCTTTTTGGTTTCCTATTCCTTCTTCAATTATCTCTCTTCATTTAGTTGTGAACATTTTTTCGGTCTCGTCGAAGCAATGGTGGCGGGTGGCAATTCCAAATCCGACATCTCCTTTGCTGGCACTTACGCTAGCAGTGCTTTCGCTGCATGTTTCGCCGAGGTGTGTACTCTTCCTTTGGACACCGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGTAGTTGGTGATGTGGTGACCTTACCTAAATATAGGGGTTTGCTGGGAACGGTTGGAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGGATTGTGCCAGGGCTACATCGTCAATGTTTGAATGGTGGTTTAAGAATTGCGTTATATGAGCCTGTTAAGAATTTCTATGTTGGGCCTGACCATGTTGGAGATGTTCCATTGTTTAAGAAAATTCTCGCTGGATTTACAACTGGTGCTATGGCAATTGCAGTGGCGAATCCAACTGATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAATGGCATCATTAATGCTGCTGAACTAGCCAGCTATGATCAAGTAAAACAGACTATTTTGAAAATTCCTGGATTCACCGACAATGTTGTAACTCACCTTCTTGCTGGTCTAGGAGCAGGATTTTTTGCAGTCTGTGTTGGCTCCCCTGTTGATGTGGTTAAGTCGAGAATGATGGGAGATTCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGATGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACAGGCTAAAAAGTTTGTCAAAACTTTAGAATCAGCTTGACTTCAAACAAATTATCAGTAGATTTTTTTTTTTGAGGAGACTCCCCTGGATGCAATGGAAATTGTCAACAAAATAAAAACTTCTCTTCATTTTGTTAATTGAAATGTATCAAAACATTTTTTGCTGGGGGAAATTTGAAGTATTAATAAATTAGAAGAGCTATGCCATCTCCCTGCAATTTAAAATTTTATTTGTTGGGCTTGGGCTTGGGCTGGGACTTGGGCATGGGAACTTCCTTTAAAAGTCCAAGCCTAGCAGTATGTTTCCATATCTAAGTGAAATATCAGCTTATGCTTTTTTTTTAGTGCAAAATCCGTATCAAAAACAATTTTCTTTACAGCACAAGGCATAGAGATCAAAAATGTAATTCTCTTCTCTCAAGAGGAGAATTTTTATTCAGGGCCATGGCCAATGAAGA
Coding sequences of Glyma18g42217
>Glyma18g42217.1   sequence type=CDS   gene model=Glyma18g42217   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGGGTGGCAATTCCAAATCCGACATCTCCTTTGCTGGCACTTACGCTAGCAGTGCTTTCGCTGCATGTTTCGCCGAGGTGTGTACTCTTCCTTTGGACACCGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGTAGTTGGTGATGTGGTGACCTTACCTAAATATAGGGGTTTGCTGGGAACGGTTGGAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGGATTGTGCCAGGGCTACATCGTCAATGTTTGAATGGTGGTTTAAGAATTGCGTTATATGAGCCTGTTAAGAATTTCTATGTTGGGCCTGACCATGTTGGAGATGTTCCATTGTTTAAGAAAATTCTCGCTGGATTTACAACTGGTGCTATGGCAATTGCAGTGGCGAATCCAACTGATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAATGGCATCATTAATGCTGCTGAACTAGCCAGCTATGATCAAGTAAAACAGACTATTTTGAAAATTCCTGGATTCACCGACAATGTTGTAACTCACCTTCTTGCTGGTCTAGGAGCAGGATTTTTTGCAGTCTGTGTTGGCTCCCCTGTTGATGTGGTTAAGTCGAGAATGATGGGAGATTCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGATGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACAGGTACAAGTTGAATACTTTGTGATAGCTTTCCATTTTTCCTTTCCTTCTTATCACCTATCTCATGGAATTCTAGTTTATTTTTATAGCATACTTGTCTGCTGCGGTAGAGGTTAG

>Glyma18g42217.2   sequence type=CDS   gene model=Glyma18g42217   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGGCGGGTGGCAATTCCAAATCCGACATCTCCTTTGCTGGCACTTACGCTAGCAGTGCTTTCGCTGCATGTTTCGCCGAGGTGTGTACTCTTCCTTTGGACACCGCCAAAGTTAGGCTTCAGCTTCAAAAACAAGCTGTAGTTGGTGATGTGGTGACCTTACCTAAATATAGGGGTTTGCTGGGAACGGTTGGAACCATTGCCAGGGAAGAAGGTCTTTCAGCACTCTGGAAGGGGATTGTGCCAGGGCTACATCGTCAATGTTTGAATGGTGGTTTAAGAATTGCGTTATATGAGCCTGTTAAGAATTTCTATGTTGGGCCTGACCATGTTGGAGATGTTCCATTGTTTAAGAAAATTCTCGCTGGATTTACAACTGGTGCTATGGCAATTGCAGTGGCGAATCCAACTGATCTTGTGAAAGTTAGACTTCAAGCAGAAGGAAAATTACCTCCTGGTGTGCCCAGGCGTTACTCTGGATCATTAAATGCTTATTCAACAATTGTGAGACAGGAAGGAGTTGGAGCACTTTGGACTGGGATTGGTCCCAACATAGCAAGAAATGGCATCATTAATGCTGCTGAACTAGCCAGCTATGATCAAGTAAAACAGACTATTTTGAAAATTCCTGGATTCACCGACAATGTTGTAACTCACCTTCTTGCTGGTCTAGGAGCAGGATTTTTTGCAGTCTGTGTTGGCTCCCCTGTTGATGTGGTTAAGTCGAGAATGATGGGAGATTCGAGTTACAAAAGCACCCTTGATTGTTTCGTTAAGACATTAAAAAATGATGGACCTTTTGCCTTTTATAAGGGGTTCATACCAAATTTTGGACGGCTAGGATCTTGGAATGTGATCATGTTTCTAACTCTAGAACAGGCTAAAAAGTTTGTCAAAACTTTAGAATCAGCTTGA
Predicted protein sequences of Glyma18g42217
>Glyma18g42217.1   sequence type=predicted peptide   gene model=Glyma18g42217   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAGGNSKSDISFAGTYASSAFAACFAEVCTLPLDTAKVRLQLQKQAVVGDVVTLPKYRGLLGTVGTIAREEGLSALWKGIVPGLHRQCLNGGLRIALYEPVKNFYVGPDHVGDVPLFKKILAGFTTGAMAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGIGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCVGSPVDVVKSRMMGDSSYKSTLDCFVKTLKNDGPFAFYKGFIPNFGRLGSWNVIMFLTLEQVQVEYFVIAFHFSFPSYHLSHGILVYFYSILVCCGRG*

>Glyma18g42217.2   sequence type=predicted peptide   gene model=Glyma18g42217   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVAGGNSKSDISFAGTYASSAFAACFAEVCTLPLDTAKVRLQLQKQAVVGDVVTLPKYRGLLGTVGTIAREEGLSALWKGIVPGLHRQCLNGGLRIALYEPVKNFYVGPDHVGDVPLFKKILAGFTTGAMAIAVANPTDLVKVRLQAEGKLPPGVPRRYSGSLNAYSTIVRQEGVGALWTGIGPNIARNGIINAAELASYDQVKQTILKIPGFTDNVVTHLLAGLGAGFFAVCVGSPVDVVKSRMMGDSSYKSTLDCFVKTLKNDGPFAFYKGFIPNFGRLGSWNVIMFLTLEQAKKFVKTLESA*






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