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Report for Sequence Feature Glyma18g42192

Feature Type:gene_model
Chromosome:Gm18
Start:51134317
stop:51135391
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42192
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
PF05056PFAM Protein of unknown function (DUF674) JGI ISS
UniRef100_UPI000233E54EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233E54E related cluster n=1 Tax=unknown RepID=UPI000233E54E SoyBaseE_val: 6.00E-23ISS

Expression Patterns of Glyma18g42192
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g42192 not represented in the dataset
Glyma18g42192 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42192 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g195100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g42192
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42192
>Glyma18g42192.1   sequence type=CDS   gene model=Glyma18g42192   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGGCAAAATTGATTTCTCCTCAAAGCTCTAATGTCTTTGATGCTTTTGTTAAGAAATGTAACGCCAGTTTCTTGATAACGGACGATCTGATGAAAGTTCTGCCAAACTCATTGGATATTTTTTTTTATCTGTTCAAGAATAGTGGAATAAAAGACGTGTCTTCAGTGCGTGAAATGAGCGTGACTATAGCTAAGGATCAGGCATTGGATCTGCTGAAGAGTTGTTTGCATTCGAAGACAACTTTGACAGATTTGTTCTTAGAAAAACGTTTTTTTAAGACATCATTTGAAGGGAAAAAAAATATCCCTATGAGCATTCCCGTTAGTGACCTGGCAGAGAAAGTGGTTAGCATTGGCATCAAGGAGGGTGTCCGCATGCTACGAGCATCTTTGACCTCTACATCAGCCCTAACAATTGGTCTCAATCACTTGTTGACCAAAGCTAAGGAGGAGAACTGTAATTACAAATATTATTCTGTTTTTAGGATACATCGTGGGCAATAG
Predicted protein sequences of Glyma18g42192
>Glyma18g42192.1   sequence type=predicted peptide   gene model=Glyma18g42192   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLAKLISPQSSNVFDAFVKKCNASFLITDDLMKVLPNSLDIFFYLFKNSGIKDVSSVREMSVTIAKDQALDLLKSCLHSKTTLTDLFLEKRFFKTSFEGKKNIPMSIPVSDLAEKVVSIGIKEGVRMLRASLTSTSALTIGLNHLLTKAKEENCNYKYYSVFRIHRGQ*






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