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Report for Sequence Feature Glyma18g42140

Feature Type:gene_model
Chromosome:Gm18
Start:51108366
stop:51110449
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g42140
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G09110AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF674) | chr3:2794850-2795963 REVERSE LENGTH=343 SoyBaseE_val: 5.00E-55ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF05056PFAM Protein of unknown function (DUF674) JGI ISS
UniRef100_G7L1B0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Tyrosine/dopa decarboxylase n=1 Tax=Medicago truncatula RepID=G7L1B0_MEDTR SoyBaseE_val: 1.00E-66ISS
UniRef100_I1N2S6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2S6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g42140
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g42140 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g194600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g42140
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g42140
>Glyma18g42140.2   sequence type=CDS   gene model=Glyma18g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTACAGATGAGCAGGTACACAAAGTTTCCCTAAAAGTTTTGGTGGACAAAGAGAAAAACAAAGTTATATTTGCGGAAGCAGGGAAGGATTTTGTGGACGCTTTGTTGAGTATCTTAACATTGCCTTTGGGGACTATTGCTAGACTCGTGGCTAAGGAGTCAAACATTCCACCAGTGAAATTTGGCAGCCTCAGCTCATTGTATGAAAGTGTGTCTCATCTTGAAGATAAGTATCTACGGACACAAACGTGCAAAGAAATGCTACTGCAGCCAAGGAACTCTATGGAATCTTATTGCAAGCACGTGAAACTGAACATCGATGACACCGAACCCACAAAGTACTTTCTTTGTGCAAACCTGAATTGTAGTATTGTAAGTGGGAGACAATTGTCCATTTTCAGATATCAAAGATGCCGTTGTGGAAATCTAATGAACAGAGAAGTATTTCCAATAGAAGTGATTCCAGGAAATGGTTTTGTTAATGAAATCGCAACTTTTATAATTTGTGACGATCTTTCTGTGTTGCCCAATGTTGTTGGAACAAGTGTAAGTCTTCTTAGGAAGCTTGGAATCAAAGACATGGCTACCATTGACGAACGAAATGTAGATATCAGTAAGAGGGAGGTTGTTGATATCCTTAAGTTGTCTTTGCTATCAAAGACACCCTTAACAGATTTTATCCTAGAGAAGAAAGATGATAATTTCAACCCAATAAACCAACCCCAGATTGGGATAGGAGAGAAATCATCTTATGAAAGTAGAAAGATGGATGTGAAAGTACTGGTAAGAAAATCAGATAGCAAAATTCTGTTTGTAGAAGCAGAGGCAGATTTTGCTGATTACTTTTCAGTTTGCTCACTTTACCTCTGGGTGGAGTGTTGCACATGCTTAATGGATGCTCTTCCTTAG
Predicted protein sequences of Glyma18g42140
>Glyma18g42140.2   sequence type=predicted peptide   gene model=Glyma18g42140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATDEQVHKVSLKVLVDKEKNKVIFAEAGKDFVDALLSILTLPLGTIARLVAKESNIPPVKFGSLSSLYESVSHLEDKYLRTQTCKEMLLQPRNSMESYCKHVKLNIDDTEPTKYFLCANLNCSIVSGRQLSIFRYQRCRCGNLMNREVFPIEVIPGNGFVNEIATFIICDDLSVLPNVVGTSVSLLRKLGIKDMATIDERNVDISKREVVDILKLSLLSKTPLTDFILEKKDDNFNPINQPQIGIGEKSSYESRKMDVKVLVRKSDSKILFVEAEADFADYFSVCSLYLWVECCTCLMDALP*






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