SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G13870 | AT | Annotation by Michelle Graham. TAIR10: Werner syndrome-like exonuclease | chr4:8023563-8025542 REVERSE LENGTH=285 | SoyBase | E_val: 1.00E-18 | ISS |
| GO:0006139 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound metabolic process | SoyBase | N/A | ISS |
| GO:0005622 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: intracellular | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008408 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: 3'-5' exonuclease activity | SoyBase | N/A | ISS |
| PTHR13620 | Panther | 3-5 EXONUCLEASE | JGI | ISS | |
| PF01612 | PFAM | 3'-5' exonuclease | JGI | ISS | |
| UniRef100_E5GBP0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: 3'-5' exonuclease n=1 Tax=Cucumis melo subsp. melo RepID=E5GBP0_CUCME | SoyBase | E_val: 2.00E-53 | ISS |
| UniRef100_I1N2S4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N2S4_SOYBN | SoyBase | E_val: 3.00E-98 | ISS |
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Glyma18g42111 not represented in the dataset |
Glyma18g42111 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g194500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g42111.1 sequence type=CDS gene model=Glyma18g42111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGTCGACGATAACACTAATAGGAGAAAACAGCACCGAAACCCACAACTACAAGCTCTACGAAGTCACCGTCGAAGACACCGACACCATCCAAACCCTCCTCACTTCTTCCCCCTCCCAAGTCAGCTCATGGCTCTCCACCAACACCACCCGCTACCATCCGGGCCTCATCGTGGGCCTCATCGCGCAGTGGCGGCCCAACACCCTGCCCAACATGAACAACCCCGTGGCCACCCTCCACCTCTGCGTGGACCACCGCTGCCTCATCTTCCAGATCCTCCACGCGCCCTCCGTCCCACGCGCCCTCATCTCCTTCCTCGCCAGCCCCAACGTCACATTCGTCGGGGTCGGCATCCATGGTCACGTGGACAAGCTTTTTCAAGACTACAATCTCCGCGTGGCCAATGTTCGCGACCTTCGCTCCCTTGCCGCGGAGGAGCTCAACGTGCCTGAGCTGTATTGGGCCGGGCTCGACACGTTGGGTCTGTGCACCCTGGGCTTTGAGGTTAGCACGCCCCGCTATATCACCACGAGTCGTTGGGATAATCGCTCCCTCACTGAGGAGCAGGTTGAGTATGCTGCTGTTGATGCCTTTGTCTCCTGTGGGGTTGGTCGCACTTTGACTTCTGATAACTAA
>Glyma18g42111.1 sequence type=predicted peptide gene model=Glyma18g42111 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSTITLIGENSTETHNYKLYEVTVEDTDTIQTLLTSSPSQVSSWLSTNTTRYHPGLIVGLIAQWRPNTLPNMNNPVATLHLCVDHRCLIFQILHAPSVPRALISFLASPNVTFVGVGIHGHVDKLFQDYNLRVANVRDLRSLAAEELNVPELYWAGLDTLGLCTLGFEVSTPRYITTSRWDNRSLTEEQVEYAAVDAFVSCGVGRTLTSDN*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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