SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g41961

Feature Type:gene_model
Chromosome:Gm18
Start:50963682
stop:50966996
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g41961
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G58190AT Annotation by Michelle Graham. TAIR10: receptor like protein 9 | chr1:21540720-21544330 FORWARD LENGTH=932 SoyBaseE_val: 5.00E-74ISS
GO:0007165GO-bp Annotation by Michelle Graham. GO Biological Process: signal transduction SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
KOG0472 KOG Leucine-rich repeat protein JGI ISS
PTHR24420Panther FAMILY NOT NAMED JGI ISS
PTHR24420:SF473Panther SUBFAMILY NOT NAMED JGI ISS
PF00560PFAM Leucine Rich Repeat JGI ISS
UniRef100_C6ZRZ6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Glycine max RepID=C6ZRZ6_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1N2R8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2R8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g41961
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g41961 not represented in the dataset
Glyma18g41961 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g41961 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g193800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g41961
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g41961
>Glyma18g41961.1   sequence type=CDS   gene model=Glyma18g41961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGTAGGTCTGAACTAAGGGCATTGGAGAACCTTGACTTGACTGCCAACATGTTGAACGACAGTATCTTACGGGCTCAACATCTCCAATCTCTTAATTTAAGCAGCAACCTATTGGAAGGATCATTCAATATTAGTGTTGGATTTTCTGGTAATAATTTTGCTGGTAATATTGGATCTAACCTTGCAAGTCTTACATCCCTTGATTATCTTGGTTTTGAAAGAAACCAGTTTGAAGTCCCTATTTCATTCGCACCATTTTCCAATCATTCAAACCTTAAGTTCATATCCAATGGGAATAAATTGCAAGTGCTCAGTTTGTCTTCAAGGGTCGAAACCAATTCTCTCCCCCTTCCAATCTTTCTTCATTACCATTACAATTTGACTTATTTGGATTTCACTGGTTGTAAACTAGGAGGAGAGTTTCCAAAATGGTTATTAGAAAACAACACAAAAATGACAAACCTTGTTCTGAAAAATTGTTCCTTTACTGGGTTAATCCAGCTGCCATCCCGTCCCCTACTCAAGCTGAAAAGAATTGATGTATCTGATAATGCAATAACAGGTCAAATCCTGAGTAACAATATTAATTCAATTTTTCCAAATTTGAAAATTTTAGATATGTCTATAAATGCAATCCATGGTTCAGTTCTTGGCGAGTTTGGCCAAATGAACTTGCTGCAAACATTGGATCTCTCAAATAATCATTTGTCGAGAGAAATTCCACATGAGCTAAGCAACATGAGCTCATTACATACATTGGATCTCTCAAATAATCAATTGTGTGGAGAAATACCTGAAGGCATATTTGGAGTTCTGTACCAATCCAGAGGTAAGGTTTCATCCTTGTTACTGAATGATAATAGATTTACTGGTAGACTCCCAAGCAGCATTTTTAGTCCATGCATCACTTCATTGGATAAAAGCGATAATCATTTGGTGGGAAAGATTCCAAGCCTTATAAAAAACATGTCAGGTTTGCAAGAGCTTCATATGTCCAATAATCATTTTGAAGGATCTATTCCATTAGAATTGACCGAACTTGAAAATATACTTTATCTAGATCTCTCCCAAAATAATTTGATTGGTGTTGTTCCATCTTTTATAAATTCTTCGGGGAGCATTATCCATTTGAGAGGATTATCCAAAAGAATGATCAATGGAAGCTATTCCGCAGTGATGCTACTAGACCTTAGCTTCAACGAAATAATCGATGGCCTTGAAGATTTGATACAGGAACATACAAGGCTGAACATTCTCCTTTTGAAAGGCAATCACTTTACTGGGGATATACCAAAGCAAGCCAACACTTACACGGGGAGAATCCTTGCTTACATGACTGGAATTGACTTGTCCTGCAATAAACTTAAGGGGAATATCCCATTTCAGCTTGGAAACTTGACAAGAATTCAATCATTAAACTTGTCACATAATGATTTGACAGGGCGGATTCCGACTACATTCTCCAATTTGGTTCAAATAGAGAGTTTGGATCTTTCATTTAACAAGTTGAGTGGCCAAATTCTTCCTCAACTGAGTGAGTTAACCTCCCTTGCTGTATTCAATGTGGTGCACAATAACTTATCTGGTGCAACACCTAAAAGTAAAGAGCGATTTTCGACATTTGAAGAAAGCAGCTACAAGGGTAATCAGTTCCTTTGTGGACCTCTACTACCAAAAAGTTGCAATCCCCTACCTGTTATTTTACCAAATGATGAAGACAGTGATAGTTTGTTGGACATGTTTGTTTTCTATGTGAGCTTTGTCGTGTCATACACATCAACTTTATTGGTAACTGCAGCAGCTTTATATATTAATCCTTACTGGAGGCAAGCATGGTTTTACTACATAGAATTGATGAGCCTGAATTGCTACTACTTTATCAAGGACAAATTGTACTCAAGCGTTGAGTCATTTTTCAGGCACCTTCCCGCCATATATAAACCATCATCGCCCAGGTAA
Predicted protein sequences of Glyma18g41961
>Glyma18g41961.1   sequence type=predicted peptide   gene model=Glyma18g41961   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MCRSELRALENLDLTANMLNDSILRAQHLQSLNLSSNLLEGSFNISVGFSGNNFAGNIGSNLASLTSLDYLGFERNQFEVPISFAPFSNHSNLKFISNGNKLQVLSLSSRVETNSLPLPIFLHYHYNLTYLDFTGCKLGGEFPKWLLENNTKMTNLVLKNCSFTGLIQLPSRPLLKLKRIDVSDNAITGQILSNNINSIFPNLKILDMSINAIHGSVLGEFGQMNLLQTLDLSNNHLSREIPHELSNMSSLHTLDLSNNQLCGEIPEGIFGVLYQSRGKVSSLLLNDNRFTGRLPSSIFSPCITSLDKSDNHLVGKIPSLIKNMSGLQELHMSNNHFEGSIPLELTELENILYLDLSQNNLIGVVPSFINSSGSIIHLRGLSKRMINGSYSAVMLLDLSFNEIIDGLEDLIQEHTRLNILLLKGNHFTGDIPKQANTYTGRILAYMTGIDLSCNKLKGNIPFQLGNLTRIQSLNLSHNDLTGRIPTTFSNLVQIESLDLSFNKLSGQILPQLSELTSLAVFNVVHNNLSGATPKSKERFSTFEESSYKGNQFLCGPLLPKSCNPLPVILPNDEDSDSLLDMFVFYVSFVVSYTSTLLVTAAALYINPYWRQAWFYYIELMSLNCYYFIKDKLYSSVESFFRHLPAIYKPSSPR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo