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Report for Sequence Feature Glyma18g41870

Feature Type:gene_model
Chromosome:Gm18
Start:50846130
stop:50850594
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g41870
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G01040AT Annotation by Michelle Graham. TAIR10: laccase 8 | chr5:13394-16142 REVERSE LENGTH=584 SoyBaseE_val: 0ISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0046274GO-bp Annotation by Michelle Graham. GO Biological Process: lignin catabolic process SoyBaseN/AISS
GO:0046688GO-bp Annotation by Michelle Graham. GO Biological Process: response to copper ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0052716GO-mf Annotation by Michelle Graham. GO Molecular Function: hydroquinone:oxygen oxidoreductase activity SoyBaseN/AISS
KOG1263 KOG Multicopper oxidases JGI ISS
PTHR11709Panther MULTI-COPPER OXIDASE JGI ISS
PTHR11709:SF9Panther LACCASE JGI ISS
PF00394PFAM Multicopper oxidase JGI ISS
PF07731PFAM Multicopper oxidase JGI ISS
PF07732PFAM Multicopper oxidase JGI ISS
UniRef100_B9HC76UniRef Annotation by Michelle Graham. Most informative UniRef hit: Laccase 110a n=1 Tax=Populus trichocarpa RepID=B9HC76_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI000233F11CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233F11C related cluster n=1 Tax=unknown RepID=UPI000233F11C SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g41870
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41870
ParalogEvidenceComments
Glyma07g17150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41870 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g193300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g41870
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g41870
>Glyma18g41870.1   sequence type=CDS   gene model=Glyma18g41870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGCTATTCTCGTTTTCTCTAGCATGTGCTTTTGCACTTCTAACTTCTTCCCTGGCTTCAGCAACTATACAGGAACACACTTTCAAAGTTCAAAACACGACTATCAAACGCTTTTGCAAGGAGCAAGTGATTGTCACAGTTAATGGGACTTTCCCTGGGCCAACGATAAATGTCCGAGAAGGTGACACAGTAATTGTCCATGTATTGAACGAGGGACCGTATGATATTACTCTTCATTGGCATGGAGTGTTGCAGCTCTTTAGTCCTTGGGCAGATGGTCCTGAATATGTAACTCAATGCACAATTAGACCAAGAAGTAAATACACTTATAAATTCAACGTTACACAACAAGAAGGAACCGTATGGTGGCATGCTCATGCATCATATTTACGAGCAACAGTTCATGGTGCTTTCATCATTCAGCCTCGTTCAGGCCAATTTCCATTTCCTAAACCGTACAAGCAAATTCCTCTTATATTAGGAGATTTGTATAACTCTAATGTTGAGGATATTACTACCGAAGCACAGGCCAGTGGCGGTGGACCAAACATATCTTGTGCCTTTACAATCAATGGTTTTACTAGCGGCCTTCTCATTAATAATTGTACTGAAAATGAGACATTTAAGATGAAAGTCCAGCAAGGGAAAACCTACATGCTCCGAATGATCAACGCTGCACTCAATTACGACCTATTCTTCAAGATAGCGAACCACAATTTCACAGTGGTTGCCGTCGACGCCTCCTACACCGACCACTACGTCACCGACCTCATCGTCATTGCCCCCGGCCAGAGTGCTGACGTGTTATTCACAGCGAACCAACCCATCGGCTCGTACTACATGGTTGCATCTCCTTACGTTGTTGGTCTCGATCACTTTGACGTCAACGTAGGTCGCGGCACGGTCATTTACGAAAATGCCCCGCCGTCACCAAAGCCCGTGATGCCAATTCTACCCCCCTTCAACGACACGGACACAGCTTATAACAAATTCTACAACGTTGATGAGCACATGTTCATTACCATTGGGTTCAACACAGAATTTTGTGATTCCAAGAATCCCAACAATGCCTCGTGTAAGGGCCCAAATGGTCAAAGATTTTCTGCCAGCATGAACAACGAGTCATTTGCTGTTCCCGCGGGTGTGAAGTTTTCTTTGTTGGAAGCATTCTATGAAAACATGAGTGGAGTTTACACTACGGATTTCCCTAACAAGCCACCAGTTATGTTCGACTTCACAAATCTGAACAACGCTAATAATATGAACCTTCTATTTGCGCCTAAATCAACCAAGGCGAAGAAACTCAGGTTCAATTCGACGGTGGAGATTGTGTTTCAGAATACAGCACTTCTTGGGGGCCAGAACCACCCCATGCACATTCATGGGTATAGCTTCCATGTTTTGGCTCAAGGGTTCGGGAATTTCCACAAGAAGGATAGGGCTAAGTTTAATTTGGTGAATCCGCAATTTCGCAACACTGTTGGTGTGCCTATGGGAGGATGGACTGTGATCAGATTCCAAGCAAACAATCCAGGGGTTTGGCTTGTGCATTGCCATATGGAAGACCATGTGCCATGGGGACTAGCCATGATTTTTGAGGTTGAGAATGGACCAACTCCTTCAACTTCAGTCCCTCCACCACCTGCTGATCTACCTAAATGTTAA
Predicted protein sequences of Glyma18g41870
>Glyma18g41870.1   sequence type=predicted peptide   gene model=Glyma18g41870   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLFSFSLACAFALLTSSLASATIQEHTFKVQNTTIKRFCKEQVIVTVNGTFPGPTINVREGDTVIVHVLNEGPYDITLHWHGVLQLFSPWADGPEYVTQCTIRPRSKYTYKFNVTQQEGTVWWHAHASYLRATVHGAFIIQPRSGQFPFPKPYKQIPLILGDLYNSNVEDITTEAQASGGGPNISCAFTINGFTSGLLINNCTENETFKMKVQQGKTYMLRMINAALNYDLFFKIANHNFTVVAVDASYTDHYVTDLIVIAPGQSADVLFTANQPIGSYYMVASPYVVGLDHFDVNVGRGTVIYENAPPSPKPVMPILPPFNDTDTAYNKFYNVDEHMFITIGFNTEFCDSKNPNNASCKGPNGQRFSASMNNESFAVPAGVKFSLLEAFYENMSGVYTTDFPNKPPVMFDFTNLNNANNMNLLFAPKSTKAKKLRFNSTVEIVFQNTALLGGQNHPMHIHGYSFHVLAQGFGNFHKKDRAKFNLVNPQFRNTVGVPMGGWTVIRFQANNPGVWLVHCHMEDHVPWGLAMIFEVENGPTPSTSVPPPPADLPKC*






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