Glyma18g41800 - SoyBase

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Report for Sequence Feature Glyma18g41800

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50730944
stop:	50731380
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41800

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G69410	AT	Annotation by Michelle Graham. TAIR10: eukaryotic elongation factor 5A-3 \| chr1:26089301-26090194 FORWARD LENGTH=158	SoyBase	E_val: 2.00E-35	ISS
GO:0006413	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational initiation	SoyBase	N/A	ISS
GO:0006452	GO-bp	Annotation by Michelle Graham. GO Biological Process: translational frameshifting	SoyBase	N/A	ISS
GO:0008612	GO-bp	Annotation by Michelle Graham. GO Biological Process: peptidyl-lysine modification to hypusine	SoyBase	N/A	ISS
GO:0045901	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translational elongation	SoyBase	N/A	ISS
GO:0045905	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of translational termination	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity	SoyBase	N/A	ISS
GO:0003746	GO-mf	Annotation by Michelle Graham. GO Molecular Function: translation elongation factor activity	SoyBase	N/A	ISS
GO:0043022	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ribosome binding	SoyBase	N/A	ISS
PTHR11673	Panther	TRANSLATION INITIATION FACTOR 5A-RELATED	JGI		ISS
PF01287	PFAM	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold	JGI		ISS
UniRef100_C6ZHS4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Eukaryotic translation initiation factor 5A2 n=1 Tax=Glycine max RepID=C6ZHS4_SOYBN	SoyBase	E_val: 1.00E-38	ISS
UniRef100_UPI000233F119	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233F119 related cluster n=1 Tax=unknown RepID=UPI000233F119	SoyBase	E_val: 9.00E-45	ISS

Expression Patterns of Glyma18g41800

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g41800 not represented in the dataset	Glyma18g41800 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g41800 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g192600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g41800

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g41800

Limit To All Plant Sequences

>Glyma18g41800.1   sequence type=CDS   gene model=Glyma18g41800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACACACCACAATTACCAGCTCATTGATATTGCTGAGGATGGATTTTTGAGTCTGCTTACTAAAAATGGGAACACCAAGGATGACCTCAAGCTTCCCACTGATGAGAGTCTGCTCACTCAGATAAAGGATGGGTTTGTTGAGGGCAAGGATCTTGTTGTGTCTGTCATGTCTGCTATTGGTGAGGAACAAACTTGCGCTCTGAAGGATATTGGGCCTAAGAACTAG

Predicted protein sequences of Glyma18g41800

Limit To All Plant Sequences

>Glyma18g41800.1   sequence type=predicted peptide   gene model=Glyma18g41800   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
THHNYQLIDIAEDGFLSLLTKNGNTKDDLKLPTDESLLTQIKDGFVEGKDLVVSVMSAIGEEQTCALKDIGPKN*

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