Glyma18g41711 - SoyBase

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Report for Sequence Feature Glyma18g41711

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50688173
stop:	50693445
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41711

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G01030	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3527) \| chr5:10638-13003 FORWARD LENGTH=744	SoyBase	E_val: 2.00E-62	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF12043	PFAM	Domain of unknown function (DUF3527)	JGI		ISS
UniRef100_Q9FGU9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gb\|AAC95187.1 n=1 Tax=Arabidopsis thaliana RepID=Q9FGU9_ARATH	SoyBase	E_val: 2.00E-50	ISS
UniRef100_UPI0002338533	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338533 related cluster n=1 Tax=unknown RepID=UPI0002338533	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g41711

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g41711 not represented in the dataset	Glyma18g41711 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41711

Paralog	Evidence	Comments
Glyma07g17101	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41711 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g192400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g41711

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g41711

Limit To All Plant Sequences

>Glyma18g41711.1   sequence type=CDS   gene model=Glyma18g41711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATTTGGTTTAAGCCTTCGAAAGAAAAGCTCAAAGCAGCAAAGCAGGTCAAAGACAGACAAGGAGAGTTCTGATTTGCCTCAACCCAATCCATGTTCAAAGGATTCACTTAAGCTTAAATCAAAGTCTAATGTTGGTCAAGCAAGCAGTGATTCTTGTCATAAAGCAAAGCATGATGTAAAAGGAAAGGTTCAGCACTTGGATAGTGCAAAGGGAAGTTCAACTCAACCTGATGAACTTGTCAAGTACATGTCTAATTTGCCCAGTTTTCTCAAGCGTTCTGATGGAGGAGAAAGCATTCAAGGGAAGGCTTTAAATGTTGGAGTTCTTGATTGGTCACATCTTGAAAAATGGAAGAACAAACAAACACATACAAAGGCAGAAGCTAGCAATTTCACATCATCCAATAGCAGTAAAGAAATATCCTCAAGGGCAGCCACTACATCATCGTCTGCCACTTCGGGTGGCCATAATAAAAAGCTTGATGGTAGAAAAGTTTCGAGTTCTTCACGAAGCAAGGGACCTTATAAAGAAGGCCTTCCTAGAAGATCTAAAATGTCTTCTCAGAATGTCAAGCACTATCAACATTCTGAAACTGAAACAAAGACCCTTGGAGATGAGCTTGGGATGTCACCCTCGGAATTTGGCAAAACTCAGTCAGATACATCACTTCGAAGGGTGAAAGTTAATGACTATGATGAAATAACTTCAGTAGTTGAAAGCTCTGCATCCAAGTCCAGGCATAATGTGGTCTCACTAGTTCCGAATGAAAATTCAAGTGGTAGGGATGTTGAAGAAAAGAAGAGGATGGAGGGTTTACAGCAGCATAGCCTCAAGAAAAAGGAGAGGAGTCTAAAGTCCAGTTCTGATAAGAGATTTCCATCATTAGAATCAAAAACTAAAGGAGTCTCATTTGATTCTCAGAAGAAAATGATTTCCAGCAGCAGTGAAGCCAAGAAAAAGATGGATCAGTGGCAGGAGTCAGATATTGATGCTGGTTATGAACAAAATCATAGGATGCCTAATAATATTGTGTTGCTTCGTCCCCCAAGAGTTCTGCAATTGAAATCAGAAGACTATTTTCAGCATTCTCAATCAAGAACTTCATCTGAAGAAGATTTTTTGGAATCAAGCTGGAGTAGTTTGTCATATATGTCCATTCCTGAGGAGGTTTACACTGAAGATGTACATTCTAAAATTCCTCATTCAAGTGTACTGCCTTCTGTGACTGAGCTTGCTTCTTCAGAAACATTGCAACATAGTATCAATACTGATCTAGATATGGATCGTTCTTCTGTTTTATCTAAGAAACCAGCATGCTCAAATAGCATATCTAGTCTCCAATCTGAAAATACTTGCATTGAAAAGGATGTGTTAGATATCAAGCCAAAAAATCAGTGTGCTTTCAGTAATGTGCTGAAATCACTGGACCATGAAACTGCTGAGCTGACACCTCAGAATCCCTCATCTAATTGTCGGCTTAGCTTAAGCTTAAGCTTAAGCCGGATTGGAAGAAGTTTTAGTTTCAAGGAAGGGTCTATTTCAAAACTTAGCTCCACGTATGTTGGTGCAAAGTCTGGTCCAGTGACACCTGAATCTTATGCTTATTTGAATAATCATAGCGAAGATATGGTAAAAGGTCATAACAGAACTATGTCCAGCCCCTTCCTAAAGTTATTAGATCCCATATTGAAGCGTAAGGCATCAAACATACAGTTTTCAGATGAACAAAGTGTGACATCAAAAGGAAGCATGGATTCCATCAGCTTGAGGACAATCAATCTGTCTGATGAAAAGAGCAAGGAATCACCAACCCAAGCCCTTTTGCAGTTAACAATAAGAAATGGAGTACCTTTGTTTAAATTTGTGCTCAACAGTGAAAGAAAGGTTCTTGCTGCGACCATGAAGAGCTTAGCATTGCCGGAGAAGGATGATGTAGACTGCTATTTCACATTCTACCTTGTTAATGAAATTAAGAAAAAGAGTGGCAAATGGATGAATCATAGGAGTAAAGAAAAAAATTGTGGATATGTCTACAATATTGTTGGTCAGATGAAAGTTTCTAGCTCTAAAACCACTGAATCAAGCAACGAGAACTCCAAGAGAGAGAGTGTGGTGAAAGAATATGTGCTAATGGGAGTTGAAGTTGACCAGCTAGATCAAGAACCACCAGAATTCTTCATGAGCAAGGAGCTTGCAGCTGTTGTTATTGAGATCCCTTGTGAAAACGTAAATCATGAAGGACTATCATATAGTCATAACTTACTGAGAAAAAGATGCTTAAAGTGCTTGGCAGATGAAAAATGCTTTTGCAGCTCACAAGAAAATGAAATCTATGGCAACATTACAGTTATACTTCCTGGTGGTGTACATAGTTCACCAAACACAGGACAACCTTCACCATTAATCCATAGATGGAAGTTGGGGGGAACATGTGATTGTGGAGGTTGGGATGTTGGTTGCAAATTGCTTGTTCTCTCTAACCAAAACCTTAGTTCAAATATTCCAAGGAGTTCAAAATCTTACCTTGAGAGATTTCATCTTTTTGTTCAGGAAGGAGCTGATCAAAACACACCCCTATTCACGTTGGTTCCATTGAAGGATGGATTCTACTCAGTCGAATTCAGTTCAGAAATTAATCATTTACGAGCATTCTTCATGTCTGTGGCAGTTTTAAGCAGCCATAACTTGCCAAGTTCCTTGGAAATCAATAACATGCAAGAAGCAATCAATAAAGAATTCAGTCCCAAGAGCAACAATGAACTTCAGGGGAAAGCACCTTTATATTATAATCCAATTCCTCCATACTCCCCTGCTGACAGAGTTTAA

Predicted protein sequences of Glyma18g41711

Limit To All Plant Sequences

>Glyma18g41711.1   sequence type=predicted peptide   gene model=Glyma18g41711   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFGLSLRKKSSKQQSRSKTDKESSDLPQPNPCSKDSLKLKSKSNVGQASSDSCHKAKHDVKGKVQHLDSAKGSSTQPDELVKYMSNLPSFLKRSDGGESIQGKALNVGVLDWSHLEKWKNKQTHTKAEASNFTSSNSSKEISSRAATTSSSATSGGHNKKLDGRKVSSSSRSKGPYKEGLPRRSKMSSQNVKHYQHSETETKTLGDELGMSPSEFGKTQSDTSLRRVKVNDYDEITSVVESSASKSRHNVVSLVPNENSSGRDVEEKKRMEGLQQHSLKKKERSLKSSSDKRFPSLESKTKGVSFDSQKKMISSSSEAKKKMDQWQESDIDAGYEQNHRMPNNIVLLRPPRVLQLKSEDYFQHSQSRTSSEEDFLESSWSSLSYMSIPEEVYTEDVHSKIPHSSVLPSVTELASSETLQHSINTDLDMDRSSVLSKKPACSNSISSLQSENTCIEKDVLDIKPKNQCAFSNVLKSLDHETAELTPQNPSSNCRLSLSLSLSRIGRSFSFKEGSISKLSSTYVGAKSGPVTPESYAYLNNHSEDMVKGHNRTMSSPFLKLLDPILKRKASNIQFSDEQSVTSKGSMDSISLRTINLSDEKSKESPTQALLQLTIRNGVPLFKFVLNSERKVLAATMKSLALPEKDDVDCYFTFYLVNEIKKKSGKWMNHRSKEKNCGYVYNIVGQMKVSSSKTTESSNENSKRESVVKEYVLMGVEVDQLDQEPPEFFMSKELAAVVIEIPCENVNHEGLSYSHNLLRKRCLKCLADEKCFCSSQENEIYGNITVILPGGVHSSPNTGQPSPLIHRWKLGGTCDCGGWDVGCKLLVLSNQNLSSNIPRSSKSYLERFHLFVQEGADQNTPLFTLVPLKDGFYSVEFSSEINHLRAFFMSVAVLSSHNLPSSLEINNMQEAINKEFSPKSNNELQGKAPLYYNPIPPYSPADRV*

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