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Report for Sequence Feature Glyma18g41623

Feature Type:gene_model
Chromosome:Gm18
Start:50536028
stop:50537291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g41623
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G55410AT Annotation by Michelle Graham. TAIR10: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein | chr5:22460677-22461081 FORWARD LENGTH=107 SoyBaseE_val: 2.00E-23ISS
GO:0006869GO-bp Annotation by Michelle Graham. GO Biological Process: lipid transport SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0008289GO-mf Annotation by Michelle Graham. GO Molecular Function: lipid binding SoyBaseN/AISS
PF00234PFAM Protease inhibitor/seed storage/LTP family JGI ISS
UniRef100_I1N2Q6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2Q6_SOYBN SoyBaseE_val: 4.00E-64ISS
UniRef100_O24101UniRef Annotation by Michelle Graham. Most informative UniRef hit: MtN5 protein n=1 Tax=Medicago truncatula RepID=O24101_MEDTR SoyBaseE_val: 8.00E-35ISS

Expression Patterns of Glyma18g41623
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g41623 not represented in the dataset
Glyma18g41623 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41623
ParalogEvidenceComments
Glyma07g17030 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41623 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g191800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g41623
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g41623
>Glyma18g41623.1   sequence type=CDS   gene model=Glyma18g41623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCAGTCTAGTGGCAAAACTTTGGTGCAGTGGTTGGTAGCAGCATTGCTCATTGCCTTGTTGGGTGGTGCACAAGCTGTTGCAATATGTAACATAGACTCAAGTCAATTAAACTTGTGTCGTGCTGCAGTTACTGGTCAAAACCCTCCACCACCGGATGAGAAATGTTGTGCAGTTATTCGCCAAGCCAATTTGCGTTGCCTCTGCAGTTACAAGTCTATCCTACCTTCATTCGGAATAAACCCCAAAAATGCTTTGGCCTTGCCTGGTAAATGTGGTCTGCAATCACCTCCTAATTGTTGA
Predicted protein sequences of Glyma18g41623
>Glyma18g41623.1   sequence type=predicted peptide   gene model=Glyma18g41623   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAQSSGKTLVQWLVAALLIALLGGAQAVAICNIDSSQLNLCRAAVTGQNPPPPDEKCCAVIRQANLRCLCSYKSILPSFGINPKNALALPGKCGLQSPPNC*






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