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Report for Sequence Feature Glyma18g41490
Feature Type: gene_model
Chromosome: Gm18
Start: 50396515
stop: 50399569
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g41490
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G54000 AT
Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Uncharacterised conserved protein UCP022260 (InterPro:IPR016802); Has 94 Blast hits to 94 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 94; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:19996757-19998197 FORWARD LENGTH=352
SoyBase E_val: 1.00E-34 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N2P9 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2P9_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g41490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g41490
Paralog Evidence Comments
Glyma07g16970 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g41490 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g191000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g41490
Transcripts of Glyma18g41490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g41490.2 sequence type=transcript gene model=Glyma18g41490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAGAACTTGGATGACGGCGAGTTCTGGCTCCCGCCGCAGTTCCTCGCCGACGACGACGTTTTGCCGACACCCTTTGAAGCAAAGTTCCCATCTTTGCCCGACGACACTGTTTTGTTCCCCTCCGAGTGGCCGTACGGTTCCCCAGTTGATTCTACCGTTGGTGGCTCCAGTGAGACCGAGAGCGACGAGGAGGAGCAACTCGTCGCTGAGTTAACTCGCCGCTTAACTCGCTCCTCTCTTCAATCTGATACCAAGTCTGCGGGTCGGTTTGTGTCTAGTTCTCCACAATCCACGCTTTGCGCGTTCGGAAGTGGGTGTGGTTGCGGCAAAGGGTCGAGCCAGGGAAGCCCTGATGGTGTTTGCAAGTTGTCCTCTGCGAAGACCACTTGGGATCTGCTGCATGCGGCTGCAGGGGAAGTTGAGAGGATGAGGTTGAAGCAAGAAGGTTATGCTTTCAACCATCAAAATGGAAACCTCATTCCCCAAAGAAAACCTTCTCCAGTCATCCCTTTACCCTCCAAAACCACCACCTCAACGCCAAACCCTGATATGGGTGGTTTCTACACGCAACAACACTCACTTTCTCACCAGCGATTGCAGATAGCACAATTTCAGATGTTGAGACAGCAACAGCTGGCAAAGCAGCAGAACTCGGTGTGGAATTTACAGAAGCAATGTGGTGGGGTTTACTCTCAGAGGCAACAACAGAACAACCAAATGGATCACAATAGAGGGAGGAACAATGATGTTAACAACAGTGTTGGTGGAAGAAATGTTAGGCCTTTGGGTTTGTCTGCATCTGCATGGCCTCCTCTGCAGCACGCGAAGCAGCAGAACCAGAATTATGGTTCTGGCATGAGGGCTGTGTTTCTCGGAAACCCTTCTGGGAGAAGAGAATGTGCTGGAACCGGTGTTTTCCTCCCTCGGCGAGTTGATACCCCAGAGCCACGAAAGAAGCAAGCTTGTTCAACTGTGCTGGTTCCGACCAGAGTGGCACAGGCCCTAAATCTGAATCTTGATGACATGATGGCTGGCCAGCCGCAACACTTACAACGATTTAATGCTAGTTCCAACATGGAAAATGGTAAATATTTTTCTACACTTTGTGGTTGTATATTTGCCCTTTGAAATCCTGTTTTGTTTTTTCTTAACGTAAAAAATTCCAAAATGTTTGGTTTACCTGTGATTGTGAAATCCTTTTGTTTTGTTTTTTCTTTGTAGTGTATAAAATCCTAAAATGTTTGGTTTGTTGAGCTGTGTATCTTTGGCTTTTTGTTCATCCAGGTGCAGCTGTTTCCAGGCAGAGGAGTAATTATGTCCTTTCTCAACAACAGAAGCGCAACCTCAAATCTCAGCCAGCAGTGTACCATGAGATTAGGCTGCCACAGGAGTGGACATACTGATAATGATGATAAATCTTTTGCTTGTTAGGGTGGGGAATAGTGTTTTTTTAATCTTTTTTTGGGGTGGGGGTGATTTAGGAAAAATGGTAGGGGGTTGAAGGAAGGGGGGGTAGAAATGAAAATGTAGTAGTAGTCTTCTACAGGAGGGGAATAGGTTTATAGAAGAAGAAATAGGTTTTTTGTTGGCAATTGGGGTTAAAAAAGGAAGTTTAATGAAAAAGGAAAAAACTTTGTTGGAAAACATAAGATGGTTTTATTTTTTTTGTGTTGGCTTGGTTGGTTACAGTTGTAGAGGGGTTATAATAATATTAGGAGCCTATGAAAAAAAAAGAAGCTAGCAATGCTGCAACAGTGCTGAAATTGCCAGTGATATCAAGTTACTTTTGTTCTTTTTGATGGGCTTCGAAAGTCACAACAAGGGAAAGACAAAAGCGGTGGATGGGTCAAATTTTTACCCTTTTTTATTTGGTGCTTTAGGGTAAAAATAAACAAAGCAATTTGGAAGGGGCTGGACCATATTTGCAGAGGGATTACGGCTCCTTCCAATTGTTGAATCACAGTGGAATCATTTTGGGGGAATACTTGTCAGAAGTAACATCTGATTCCAACCTGTCCACCCGCATTACTTTACTACAATAAATAATAATTACAATTTAAAAGTGGCTTTCACTTTGTCCAAGGAGTGGTTGCAGCTGGATGTGTGTAAAATTTAATAAAATTGCC
Coding sequences of Glyma18g41490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g41490.1 sequence type=CDS gene model=Glyma18g41490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAGAACTTGGATGACGGCGAGTTCTGGCTCCCGCCGCAGTTCCTCGCCGACGACGACGTTTTGCCGACACCCTTTGAAGCAAAGTTCCCATCTTTGCCCGACGACACTGTTTTGTTCCCCTCCGAGTGGCCGTACGGTTCCCCAGTTGATTCTACCGTTGGTGGCTCCAGTGAGACCGAGAGCGACGAGGAGGAGCAACTCGTCGCTGAGTTAACTCGCCGCTTAACTCGCTCCTCTCTTCAATCTGATACCAAGTCTGCGGGTCGGTTTGTGTCTAGTTCTCCACAATCCACGCTTTGCGCGTTCGGAAGTGGGTGTGGTTGCGGCAAAGGGTCGAGCCAGGGAAGCCCTGATGGTGTTTGCAAGTTGTCCTCTGCGAAGACCACTTGGGATCTGCTGCATGCGGCTGCAGGGGAAGTTGAGAGGATGAGGTTGAAGCAAGAAGGTTATGCTTTCAACCATCAAAATGGAAACCTCATTCCCCAAAGAAAACCTTCTCCAGTCATCCCTTTACCCTCCAAAACCACCACCTCAACGCCAAACCCTGATATGGGTGGTTTCTACACGCAACAACACTCACTTTCTCACCAGCGATTGCAGATAGCACAATTTCAGATGTTGAGACAGCAACAGCTGGCAAAGCAGCAGAACTCGGTGTGGAATTTACAGAAGCAATGTGGTGGGGTTTACTCTCAGAGGCAACAACAGAACAACCAAATGGATCACAATAGAGGGAGGAACAATGATGTTAACAACAGTGTTGGTGGAAGAAATGTTAGGCCTTTGGGTTTGTCTGCATCTGCATGGCCTCCTCTGCAGCACGCGAAGCAGCAGAACCAGAATTATGGTTCTGGCATGAGGGCTGTGTTTCTCGGAAACCCTTCTGGGAGAAGAGAATGTGCTGGAACCGGTGTTTTCCTCCCTCGGCGAGTTGATACCCCAGAGCCACGAAAGAAGCAAGCTTGTTCAACTGTGCTGGTTCCGACCAGAGTGGCACAGGCCCTAAATCTGAATCTTGATGACATGATGGCTGGCCAGCCGCAACACTTACAACGATTTAATGCTAGTTCCAACATGGAAAATGGTGCAGCTGTTTCCAGGCAGAGGAGTAATTATGTCCTTTCTCAACAACAGAAGCGCAACCTCAAATCTCAGCCAGCAGTGTACCATGAGATTAGGCTGCCACAGGAGTGGACATACTGA
>Glyma18g41490.2 sequence type=CDS gene model=Glyma18g41490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGAGAACTTGGATGACGGCGAGTTCTGGCTCCCGCCGCAGTTCCTCGCCGACGACGACGTTTTGCCGACACCCTTTGAAGCAAAGTTCCCATCTTTGCCCGACGACACTGTTTTGTTCCCCTCCGAGTGGCCGTACGGTTCCCCAGTTGATTCTACCGTTGGTGGCTCCAGTGAGACCGAGAGCGACGAGGAGGAGCAACTCGTCGCTGAGTTAACTCGCCGCTTAACTCGCTCCTCTCTTCAATCTGATACCAAGTCTGCGGGTCGGTTTGTGTCTAGTTCTCCACAATCCACGCTTTGCGCGTTCGGAAGTGGGTGTGGTTGCGGCAAAGGGTCGAGCCAGGGAAGCCCTGATGGTGTTTGCAAGTTGTCCTCTGCGAAGACCACTTGGGATCTGCTGCATGCGGCTGCAGGGGAAGTTGAGAGGATGAGGTTGAAGCAAGAAGGTTATGCTTTCAACCATCAAAATGGAAACCTCATTCCCCAAAGAAAACCTTCTCCAGTCATCCCTTTACCCTCCAAAACCACCACCTCAACGCCAAACCCTGATATGGGTGGTTTCTACACGCAACAACACTCACTTTCTCACCAGCGATTGCAGATAGCACAATTTCAGATGTTGAGACAGCAACAGCTGGCAAAGCAGCAGAACTCGGTGTGGAATTTACAGAAGCAATGTGGTGGGGTTTACTCTCAGAGGCAACAACAGAACAACCAAATGGATCACAATAGAGGGAGGAACAATGATGTTAACAACAGTGTTGGTGGAAGAAATGTTAGGCCTTTGGGTTTGTCTGCATCTGCATGGCCTCCTCTGCAGCACGCGAAGCAGCAGAACCAGAATTATGGTTCTGGCATGAGGGCTGTGTTTCTCGGAAACCCTTCTGGGAGAAGAGAATGTGCTGGAACCGGTGTTTTCCTCCCTCGGCGAGTTGATACCCCAGAGCCACGAAAGAAGCAAGCTTGTTCAACTGTGCTGGTTCCGACCAGAGTGGCACAGGCCCTAAATCTGAATCTTGATGACATGATGGCTGGCCAGCCGCAACACTTACAACGATTTAATGCTAGTTCCAACATGGAAAATGGTAAATATTTTTCTACACTTTGTGGTTGTATATTTGCCCTTTGA
Predicted protein sequences of Glyma18g41490
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g41490.1 sequence type=predicted peptide gene model=Glyma18g41490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAENLDDGEFWLPPQFLADDDVLPTPFEAKFPSLPDDTVLFPSEWPYGSPVDSTVGGSSETESDEEEQLVAELTRRLTRSSLQSDTKSAGRFVSSSPQSTLCAFGSGCGCGKGSSQGSPDGVCKLSSAKTTWDLLHAAAGEVERMRLKQEGYAFNHQNGNLIPQRKPSPVIPLPSKTTTSTPNPDMGGFYTQQHSLSHQRLQIAQFQMLRQQQLAKQQNSVWNLQKQCGGVYSQRQQQNNQMDHNRGRNNDVNNSVGGRNVRPLGLSASAWPPLQHAKQQNQNYGSGMRAVFLGNPSGRRECAGTGVFLPRRVDTPEPRKKQACSTVLVPTRVAQALNLNLDDMMAGQPQHLQRFNASSNMENGAAVSRQRSNYVLSQQQKRNLKSQPAVYHEIRLPQEWTY*
>Glyma18g41490.2 sequence type=predicted peptide gene model=Glyma18g41490 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAENLDDGEFWLPPQFLADDDVLPTPFEAKFPSLPDDTVLFPSEWPYGSPVDSTVGGSSETESDEEEQLVAELTRRLTRSSLQSDTKSAGRFVSSSPQSTLCAFGSGCGCGKGSSQGSPDGVCKLSSAKTTWDLLHAAAGEVERMRLKQEGYAFNHQNGNLIPQRKPSPVIPLPSKTTTSTPNPDMGGFYTQQHSLSHQRLQIAQFQMLRQQQLAKQQNSVWNLQKQCGGVYSQRQQQNNQMDHNRGRNNDVNNSVGGRNVRPLGLSASAWPPLQHAKQQNQNYGSGMRAVFLGNPSGRRECAGTGVFLPRRVDTPEPRKKQACSTVLVPTRVAQALNLNLDDMMAGQPQHLQRFNASSNMENGKYFSTLCGCIFAL*