Glyma18g41410 - SoyBase

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Report for Sequence Feature Glyma18g41410

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50296497
stop:	50301812
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41410

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G09270	AT	Annotation by Michelle Graham. TAIR10: glutathione S-transferase TAU 8 \| chr3:2848407-2849226 REVERSE LENGTH=224	SoyBase	E_val: 1.00E-77	ISS
GO:0006635	GO-bp	Annotation by Michelle Graham. GO Biological Process: fatty acid beta-oxidation	SoyBase	N/A	ISS
GO:0009407	GO-bp	Annotation by Michelle Graham. GO Biological Process: toxin catabolic process	SoyBase	N/A	ISS
GO:0010583	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone	SoyBase	N/A	ISS
GO:0043161	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasomal ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0051788	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to misfolded protein	SoyBase	N/A	ISS
GO:0080129	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteasome core complex assembly	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004364	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glutathione transferase activity	SoyBase	N/A	ISS
KOG0406	KOG	Glutathione S-transferase	JGI		ISS
PTHR11260	Panther	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	JGI		ISS
PTHR11260:SF16	Panther	GLUTATHIONE S-TRANSFERASE THETA	JGI		ISS
PF00043	PFAM	Glutathione S-transferase, C-terminal domain	JGI		ISS
PF02798	PFAM	Glutathione S-transferase, N-terminal domain	JGI		ISS
UniRef100_I1N2P6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2P6_SOYBN	SoyBase	E_val: 3.00E-160	ISS
UniRef100_Q9FQF0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glutathione S-transferase GST 8 n=1 Tax=Glycine max RepID=Q9FQF0_SOYBN	SoyBase	E_val: 1.00E-140	ISS

Expression Patterns of Glyma18g41410

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41410

Paralog	Evidence	Comments
Glyma07g16910	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41410 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g41410

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g41410

Limit To All Plant Sequences

>Glyma18g41410.2   sequence type=transcript   gene model=Glyma18g41410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTGAGACCAAAATAAATCTTTTGAATTGATTGTTGTAAGACTTTGTAATTGAGGTGCTGCAATGGCTTCAAGTCAGGAAGAGGTGACTCTTTTGGGAGTAATTGGAAGCCCATTTGCTTGCAGGGTGAAGATTGCCCTTAAGTTGAAGGGAGTTGAATACAAATATGTGGAAGAAAATTTGGCCAACAAGAGTGATTTGCTTCTCAAATCCAACCCAGTTCACAAGAAAGTTCCAGTTTTTATTCACAATGAGAAGCCCATAGCAGAGTCTCTTGTGATTGTTGAGTACATTGATGAGACATGGAAGAACAACCCCATCTTGCCTTCTGATCCTTACCAAAGAGCCTTGGCTCGTTTCTGGTCCAAATTCATTGATGACAAGGTTTTTGGTGCTGCACAAAAAGCTGCTTTCACAGCTGATGAGAAAGAGCGTGAGAAGAATGTTGAGGAAGAACATGAGGCTCTGCAGTTTCTTGAGAATGAGATAAAGGACAAGAAGTTCTTTGGAGGAGAGGAGGTTGGATTGGTAGATATTGCTGCTGTCTACTTAGCATTTTGGATTCCTATGTTTCAAGAAATTGCGGGGTTGGAGTTATTTACAAGTGAGAAATTTCCTAAGCTCTACAAGTGGAGCCAACAAATTCTGAACCATCCAGTTGCCAAAAGAATGTCTGCCCCCTAG

Coding sequences of Glyma18g41410

Limit To All Plant Sequences

>Glyma18g41410.1   sequence type=CDS   gene model=Glyma18g41410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAGTCAGGAAGAGGTGACTCTTTTGGGAGTAATTGGAAGCCCATTTGCTTGCAGGGTGAAGATTGCCCTTAAGTTGAAGGGAGTTGAATACAAATATGTGGAAGAAAATTTGGCCAACAAGAGTGATTTGCTTCTCAAATCCAACCCAGTTCACAAGAAAGTTCCAGTTTTTATTCACAATGAGAAGCCCATAGCAGAGTCTCTTGTGATTGTTGAGTACATTGATGAGACATGGAAGAACAACCCCATCTTGCCTTCTGATCCTTACCAAAGAGCCTTGGCTCGTTTCTGGTCCAAATTCATTGATGACAAGATTGTGGGTGCTGCATGGAATGCTGTTTTCACGGTTGATGAGAAAGAGCGTGAGAAGAATGTTGTAGAAACATATGAGGCTCTGCAGTTTCTTGAGAATGAGATCAAGGACAAGAAATTCTTTGGAGGAGAAGAGGTTGGGTTGGTAGATATAGCTGGTGTCTACATAGCATTTTGGGTCCCTTTGATTCAAGAAATTGCAGGGTTGGAGCTATTAAGCAGTGAGAAATTTCCTAAGCTTTACAAGTGGAGCCAAGAATTTGTGAACCATCCAATTGTCAAAGAAGGTCTTCCCCCTAGAGACCCAGTTTTTGCCTTTTTCAAAGGACGCTATGAAAGCCTTTCTGCTTCAAGATAG

>Glyma18g41410.2   sequence type=CDS   gene model=Glyma18g41410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAAGTCAGGAAGAGGTGACTCTTTTGGGAGTAATTGGAAGCCCATTTGCTTGCAGGGTGAAGATTGCCCTTAAGTTGAAGGGAGTTGAATACAAATATGTGGAAGAAAATTTGGCCAACAAGAGTGATTTGCTTCTCAAATCCAACCCAGTTCACAAGAAAGTTCCAGTTTTTATTCACAATGAGAAGCCCATAGCAGAGTCTCTTGTGATTGTTGAGTACATTGATGAGACATGGAAGAACAACCCCATCTTGCCTTCTGATCCTTACCAAAGAGCCTTGGCTCGTTTCTGGTCCAAATTCATTGATGACAAGGTTTTTGGTGCTGCACAAAAAGCTGCTTTCACAGCTGATGAGAAAGAGCGTGAGAAGAATGTTGAGGAAGAACATGAGGCTCTGCAGTTTCTTGAGAATGAGATAAAGGACAAGAAGTTCTTTGGAGGAGAGGAGGTTGGATTGGTAGATATTGCTGCTGTCTACTTAGCATTTTGGATTCCTATGTTTCAAGAAATTGCGGGGTTGGAGTTATTTACAAGTGAGAAATTTCCTAAGCTCTACAAGTGGAGCCAACAAATTCTGAACCATCCAGTTGCCAAAAGAATGTCTGCCCCCTAG

Predicted protein sequences of Glyma18g41410

Limit To All Plant Sequences

>Glyma18g41410.1   sequence type=predicted peptide   gene model=Glyma18g41410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSQEEVTLLGVIGSPFACRVKIALKLKGVEYKYVEENLANKSDLLLKSNPVHKKVPVFIHNEKPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKIVGAAWNAVFTVDEKEREKNVVETYEALQFLENEIKDKKFFGGEEVGLVDIAGVYIAFWVPLIQEIAGLELLSSEKFPKLYKWSQEFVNHPIVKEGLPPRDPVFAFFKGRYESLSASR*

>Glyma18g41410.2   sequence type=predicted peptide   gene model=Glyma18g41410   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASSQEEVTLLGVIGSPFACRVKIALKLKGVEYKYVEENLANKSDLLLKSNPVHKKVPVFIHNEKPIAESLVIVEYIDETWKNNPILPSDPYQRALARFWSKFIDDKVFGAAQKAAFTADEKEREKNVEEEHEALQFLENEIKDKKFFGGEEVGLVDIAAVYLAFWIPMFQEIAGLELFTSEKFPKLYKWSQQILNHPVAKRMSAP*

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