Glyma18g41310 - SoyBase

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Report for Sequence Feature Glyma18g41310

Feature Type:	gene_model
Chromosome:	Gm18
Start:	50154274
stop:	50158214
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41310

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G02020	AT	Annotation by Michelle Graham. TAIR10: Encodes a protein involved in salt tolerance, names SIS (Salt Induced Serine rich). \| chr5:386557-387921 REVERSE LENGTH=149	SoyBase	E_val: 1.00E-23	ISS
GO:0006914	GO-bp	Annotation by Michelle Graham. GO Biological Process: autophagy	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N2P1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2P1_SOYBN	SoyBase	E_val: 3.00E-101	ISS
UniRef100_Q9LZM9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT5g02020/T7H20_70 n=1 Tax=Arabidopsis thaliana RepID=Q9LZM9_ARATH	SoyBase	E_val: 5.00E-21	ISS

Expression Patterns of Glyma18g41310

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41310

Paralog	Evidence	Comments
Glyma07g16760	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41310 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g189900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g41310

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g41310

Limit To All Plant Sequences

>Glyma18g41310.1   sequence type=CDS   gene model=Glyma18g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGAAGGAAAAAAATGGGTTCTTCTTCTTCTTTCACTTCTGAGCTCTTTGGGTCTAACCAGTTCCAGAAATCTTCTGCTTCTGGGATTTTTGAATCTATGTTTCCTCCACCGCCTAAGGTGTTAGGGAGAGGTTCTCTGTGCTCCGAAGTGAGTGGAAAAAGTTCCAGTGAGGGGTGGAACTACAAATTTGATTACATCAGCATGGGAAATCATGGTGAAACTCAGAACACAGCACAAAAGGATATGAGTTCTATATATCAGGAACAAAGACTTCAACCATGTCAACTTAGCTCATCAATCCATTATGGTGGCCAGGACATATATTCTTGTCCTAAGAGTACACAAGATTCAGGATACAACTCTTTGCTGTACAAGAAAGATGGGGTTGAAGATGATTTAGGAAGTAACCTGTGGCAAGGGGGTCCCTATTATTAA

Predicted protein sequences of Glyma18g41310

Limit To All Plant Sequences

>Glyma18g41310.1   sequence type=predicted peptide   gene model=Glyma18g41310   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGRKKMGSSSSFTSELFGSNQFQKSSASGIFESMFPPPPKVLGRGSLCSEVSGKSSSEGWNYKFDYISMGNHGETQNTAQKDMSSIYQEQRLQPCQLSSSIHYGGQDIYSCPKSTQDSGYNSLLYKKDGVEDDLGSNLWQGGPYY*

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