Glyma18g41130 - SoyBase

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Report for Sequence Feature Glyma18g41130

Feature Type:	gene_model
Chromosome:	Gm18
Start:	49814574
stop:	49819446
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g41130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37860	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3411) \| chr2:15856952-15858793 FORWARD LENGTH=432	SoyBase	E_val: 4.00E-178	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF11891	PFAM	Domain of unknown function (DUF3411)	JGI		ISS
UniRef100_C0Z2Z2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: AT2G37860 protein n=1 Tax=Arabidopsis thaliana RepID=C0Z2Z2_ARATH	SoyBase	E_val: 5.00E-176	ISS
UniRef100_I1N2N4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2N4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g41130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g41130

Paralog	Evidence	Comments
Glyma07g16640	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g41130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g188800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g41130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g41130

Limit To All Plant Sequences

>Glyma18g41130.1   sequence type=CDS   gene model=Glyma18g41130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATAATGGCGGGTTGTTCTTCAAATTTTGCTGTGGCTGGTTGTGCCAATGTGAGGAAAGAGATTGTTTTGGGGAATCAAAAGACAAACTTGATTAGGTTGAGTTTCAGGGGTGTGTTGAATGAGGCTACATTTCAAGTTCTACGTGGGAGCAAGTGCAGTAGATCATGTGTGCCTATTCAAAAGAAAGCAATGTTTTTTGTAATGAGTATGTCACAACCGTCGGCTGAGGCTGAATTGGAATCTGCTGTGAGTTCAATAGGATTATCAGAAGGGGGAGGTGATAGTGTCCTGAGAAAGGACCAAGAGACTCGGGATAGTGAATCGGACTCCAAAATTGATAGAGATGATGATAATGGAGTTGTATTGGATGGCAGTGGTGGTAATGGGAGCTTTGGAAGTGGTGGAGCGGGAGATGGGAGTGGAGGGGGTGGCAGCAATGACGATGGTAATGACAATGAAGAGGAGGAGTTTGGGCCAATACTGAAATATGATGAGGTAATGAGAGAGACAGAGGCTCGTGGAGCTACCCTTCCTTTGGATATGATAGAGGCTGCTAAGAGTGTGGGAATCCGCAAGGTGCTGCTTCTTAGATATTTGGATCTGCAGGGATCTTTTTGGCCTCTAGGATTTTTCATGAAATCGTGCTCTATGCTTCGCAATCGAATGCTAGCTGATCCAGCATTTCTTTTCAAAATTGGCTCAGAGATAGTCATTGATACTTGTTGTGCTACTTTTGCTGAAATACAAAAGAGAGGCAAAGATTTTTGGGCCGAATTTGAGTTGTATCTTGCAGATCTTCTCGTTGGGCTTGTTGTTAATGTTGCTTTGGTAGGTATGTTGGCACCCTATGCTCGATTAGGGAAACCATCAATATCTAGTGGATTCCTTGGTAGAATGCAGAAAGCTTATGCAGCCTTGCCTAGCAGTGTATTTGAAGCAGAAAGGCCAGGATGTAGGTTTTCTGTACAACAGAGACTTGGAACATACTTCTACAAGGGTATAATGTATGGTGCTGTTGGATTTGCATGTGGTATTATAGGCCAAGGCATTGCAAATATGATCATGACTGCAAAGCGGAGCATAAAGAAATCAGAAGAGGACATACCTGTGCCACCTCTTGTGAAGAGTGCTGCTCTTTGGGGCGTCTTTCTAGCCGTTTCTTCCAACACGCGATACCAAGTCGTCAATGGACTGGAACGTTTGGTTGAAGCTTCACCAATGGCAAAGCAGGTTCCCCCAGTTGCTCTGGCTTTCACAGTTGGTGTGCGTTTTGCCAACAATGTGTATGGTGGCATGCAATTTGTTGACTGGGCTAGGTGGAGTGGTGTGCAATAA

Predicted protein sequences of Glyma18g41130

Limit To All Plant Sequences

>Glyma18g41130.1   sequence type=predicted peptide   gene model=Glyma18g41130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIMAGCSSNFAVAGCANVRKEIVLGNQKTNLIRLSFRGVLNEATFQVLRGSKCSRSCVPIQKKAMFFVMSMSQPSAEAELESAVSSIGLSEGGGDSVLRKDQETRDSESDSKIDRDDDNGVVLDGSGGNGSFGSGGAGDGSGGGGSNDDGNDNEEEEFGPILKYDEVMRETEARGATLPLDMIEAAKSVGIRKVLLLRYLDLQGSFWPLGFFMKSCSMLRNRMLADPAFLFKIGSEIVIDTCCATFAEIQKRGKDFWAEFELYLADLLVGLVVNVALVGMLAPYARLGKPSISSGFLGRMQKAYAALPSSVFEAERPGCRFSVQQRLGTYFYKGIMYGAVGFACGIIGQGIANMIMTAKRSIKKSEEDIPVPPLVKSAALWGVFLAVSSNTRYQVVNGLERLVEASPMAKQVPPVALAFTVGVRFANNVYGGMQFVDWARWSGVQ*

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