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Report for Sequence Feature Glyma18g40780

Feature Type:gene_model
Chromosome:Gm18
Start:49517180
stop:49523909
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g40780
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G13110AT Annotation by Michelle Graham. TAIR10: serine acetyltransferase 2;2 | chr3:4214939-4216114 REVERSE LENGTH=391 SoyBaseE_val: 8.00E-51ISS
GO:0006535GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process from serine SoyBaseN/AISS
GO:0006569GO-bp Annotation by Michelle Graham. GO Biological Process: tryptophan catabolic process SoyBaseN/AISS
GO:0009684GO-bp Annotation by Michelle Graham. GO Biological Process: indoleacetic acid biosynthetic process SoyBaseN/AISS
GO:0019344GO-bp Annotation by Michelle Graham. GO Biological Process: cysteine biosynthetic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0009001GO-mf Annotation by Michelle Graham. GO Molecular Function: serine O-acetyltransferase activity SoyBaseN/AISS
GO:0016740GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity SoyBaseN/AISS
PTHR23416Panther SIALIC ACID SYNTHASE-RELATED JGI ISS
PTHR23416:SF18Panther SUBFAMILY NOT NAMED JGI ISS
PF00132PFAM Bacterial transferase hexapeptide (three repeats) JGI ISS
UniRef100_I1N1Y1UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N1Y1_SOYBN SoyBaseE_val: 7.00E-79ISS
UniRef100_Q5MYA1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Serine O-acetyltransferase 1 (Fragment) n=1 Tax=Glycine max RepID=Q5MYA1_SOYBN SoyBaseE_val: 3.00E-63ISS

Expression Patterns of Glyma18g40780
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g40780 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g188200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g40780
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g40780
>Glyma18g40780.1   sequence type=CDS   gene model=Glyma18g40780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGCAAGTTTTGAACTTTTTTTCAATCAAATTGGAGTATGTCATGATTCCAATGAGTGTGTTGCCATGCTGCTCTTCATATGTAGTGTGCACTAGTTACTGTAAACATGAAAGAAAGGAAATAAAACCAGTGGTAGATAAGAAGGGTCCTGTTATAGCTTATCATGCAACAGGACTTGTTGTGGAGGAGACTGCATTTATTGGGAATAATGTGTCAATTTTGCATAATGTGACATTGGGAGGGACTGGTAAGGCAAGAGGGGATAGACACCTTAAGATTGGTGATGGGGTATTGATAGGTCCAGGGACTTGGACTTGTATTTTAGGGAACATTAAGATTGGTGATGGAGCTAAGATTGGTGCTTGTTCTGTTGTGTTGAAGGAAGTGCCACCAAGGACTACTGCTGTTGGGAACCCTGCTAGGGTGGTTGGAGGGAAGGATAACCCTATTAAATTGGATAAGATGCCTAGTTTTACCATGGACCATACTTCATGGTTTGATTATGCTATATAG
Predicted protein sequences of Glyma18g40780
>Glyma18g40780.1   sequence type=predicted peptide   gene model=Glyma18g40780   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVQVLNFFSIKLEYVMIPMSVLPCCSSYVVCTSYCKHERKEIKPVVDKKGPVIAYHATGLVVEETAFIGNNVSILHNVTLGGTGKARGDRHLKIGDGVLIGPGTWTCILGNIKIGDGAKIGACSVVLKEVPPRTTAVGNPARVVGGKDNPIKLDKMPSFTMDHTSWFDYAI*






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