Glyma18g40775 - SoyBase

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Report for Sequence Feature Glyma18g40775

Feature Type:	gene_model
Chromosome:	Gm18
Start:	49472841
stop:	49483342
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g40775

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41980	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G43722.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:16793765-16794889 FORWARD LENGTH=374	SoyBase	E_val: 2.00E-38	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016788	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, acting on ester bonds	SoyBase	N/A	ISS
KOG4585	KOG	Predicted transposase	JGI		ISS
PTHR22930	Panther	UNCHARACTERIZED	JGI		ISS
PF04827	PFAM	Plant transposon protein	JGI		ISS
UniRef100_Q1WIR8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: PIF-like transposase n=1 Tax=Daucus carota RepID=Q1WIR8_DAUCA	SoyBase	E_val: 6.00E-73	ISS
UniRef100_UPI000233D4D0	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233D4D0 related cluster n=1 Tax=unknown RepID=UPI000233D4D0	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g40775

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g40775 not represented in the dataset	Glyma18g40775 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g40775 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g40775

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g40775

Limit To All Plant Sequences

>Glyma18g40775.1   sequence type=CDS   gene model=Glyma18g40775   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTCGTCATCTTTATCCAGGTTTTAGGTTGCATGTTGAACAGGTCTTCGGGAGCCATGGAGGAAGACGTGCGGGAGGTCCTTGGTGCCGGTCCAAAGTATTGCTTGATCATCACACTGACTCCAGTAGCACGCACATGACCAGGGTGTTCTGGTCGCCCAATGGCAACAGTCAGTACATCCTAACGCCCATGGGTGACAAACGAACCCTTGTCATCGACACTGTCCTTGTCGGCTGCAAGTGCCCATTTGGACCTGTGAAGCTTGTCCGTATTGCAAATAAATATCTTATTAACTACATCTTACAAAGTTTAGAAGTTGCTCAATCCTATGACTTGCCAATACAGATACACACAGGAGTTTGGATAACAGGAGGGAATCAAATGGGCCTGGGGGTGATTCGTCATAAAGATCATAAGATCAAATCATACAGAGTTATCTCCAATGGTACTTATTGCAATGGTACTTATTGTAAACATAGAATGGTTGTTATTCACCTTGATGAGAGGACCGCTACATTAAGGAAAGGTCCGGCAAGTCGTGCCAACTCCGATGGTGCAAATAGCTTAGCCCCGCCGTGGAGCACTGCCCCTTCTCGGCCCAACAAGACAACACCATCATCACGGCCCATGCCCAGTACAGTAACAGCAGTCACGTACCTCAATCGCGACAAAGGTGAACCCCAACTTGTTGGCGGTAGTTGCAGCTTGAGCGGCACTTGTAGCTTCAGCAGCGCAATTTGTGATAGTGACAGGGGTACTATTGTTACTGGATTTGCATCATATGCACCATCTGAAGATTCAAGACAAAATGAAGGATTCAACACAAGAATGAAAGAGACAAATGATAACATTGATAATAACACTAAGATAGACATGACAACTCAGATAATGTCTTCGGCAAAGGAAAGTGGACAGAGGAAGAGAGCGATGTCTTCATCACTATCATCAAATGACTCATCATTATCATCAAGTGACTCTTCATCTACAGATGACGATCACATTACGAAGAAAAAAGTGTTGATGTTTGTTGTACCTAATGTTACCAATTACTTTAGGAATTATGTTGTGAAAAATCCATGTAGAGATTCATGCATGACAGACCATCGTTGGGTATTTGAAATTCTAAATGGTCATCCAATACATTGTTATCAAATGTTTAGAATGAAGAAACTTGTCTTTCTTGAATTATGTGATATCTTGGAAACCAATCAACCAGGTTATTTTCATAATTATGAGGAAAGATCTAAACATTCAGGTGAAACAATATCTAGACATTTTCATAGTGTCTTAGAAGTTGTGTGCATGTTTGCAAAGGACATATTTAAGCCTATTGATTCATCATTTAGAGATACTCCTAATGAGATTTTGAAAGATGCCAGATATCGCCCTTATTTTAGGGATTGCATTGGTGCAATAGATGAAGTCTATATTGGTCGGAAAGGCTACACTACCACTAATGTCATGGTTTTTGTGACTTTAGAATGTTGGGAAGGTTCTGCACATGATACTAAGATATTTATGGAGGCTTTACATAAGCCCGCGTTGCATTTTCCATATCCTCCTCAAGGTAAATATTATCTTGTTGATTCTGGTTACCCTACTTTTATGGGTTTTCTAGGGCCGTACAAGAAAACTAGGTATCATCTCTTGCAATTTATAATTGGGCCTAGAATCAGGGGGAGAGTTGAAGTTTTTAATTATTATCATTCTAGTCTTCAAAGGAAAATTGAATGTGTATTTGGTTTATGTAAAGCGAGATGTAAGATATTGGGTAATATGCCACCTTTTGATTTGAAGACACAAAACCAAATCATTGTTGCTTGCATGGCTATACATAACTTCATTCAAAGAAATGACAAGAGTGATGGAGAATTTGATTCACTAGATGAAGATAATGAGTATATAGACATTGATGACGATGAAAGTGAAGTTGGTCCTAGTACTACAACATGA

Predicted protein sequences of Glyma18g40775

Limit To All Plant Sequences

>Glyma18g40775.1   sequence type=predicted peptide   gene model=Glyma18g40775   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVRHLYPGFRLHVEQVFGSHGGRRAGGPWCRSKVLLDHHTDSSSTHMTRVFWSPNGNSQYILTPMGDKRTLVIDTVLVGCKCPFGPVKLVRIANKYLINYILQSLEVAQSYDLPIQIHTGVWITGGNQMGLGVIRHKDHKIKSYRVISNGTYCNGTYCKHRMVVIHLDERTATLRKGPASRANSDGANSLAPPWSTAPSRPNKTTPSSRPMPSTVTAVTYLNRDKGEPQLVGGSCSLSGTCSFSSAICDSDRGTIVTGFASYAPSEDSRQNEGFNTRMKETNDNIDNNTKIDMTTQIMSSAKESGQRKRAMSSSLSSNDSSLSSSDSSSTDDDHITKKKVLMFVVPNVTNYFRNYVVKNPCRDSCMTDHRWVFEILNGHPIHCYQMFRMKKLVFLELCDILETNQPGYFHNYEERSKHSGETISRHFHSVLEVVCMFAKDIFKPIDSSFRDTPNEILKDARYRPYFRDCIGAIDEVYIGRKGYTTTNVMVFVTLECWEGSAHDTKIFMEALHKPALHFPYPPQGKYYLVDSGYPTFMGFLGPYKKTRYHLLQFIIGPRIRGRVEVFNYYHSSLQRKIECVFGLCKARCKILGNMPPFDLKTQNQIIVACMAIHNFIQRNDKSDGEFDSLDEDNEYIDIDDDESEVGPSTTT*

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