Glyma18g40617 - SoyBase

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Report for Sequence Feature Glyma18g40617

Feature Type:	gene_model
Chromosome:	Gm18
Start:	49280726
stop:	49287334
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g40617

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G31280	AT	Annotation by Michelle Graham. TAIR10: conserved peptide upstream open reading frame 7 \| chr2:13339430-13343309 FORWARD LENGTH=723	SoyBase	E_val: 8.00E-50	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR13902	Panther	SERINE/THREONINE-PROTEIN KINASE WNK (WITH NO LYSINE)-RELATED	JGI		ISS
PTHR13902:SF5	Panther	MAPKKK	JGI		ISS
UniRef100_B9T627	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Basic helix-loop-helix-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T627_RICCO	SoyBase	E_val: 1.00E-130	ISS
UniRef100_UPI000233E284	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E284 related cluster n=1 Tax=unknown RepID=UPI000233E284	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g40617

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g40617 not represented in the dataset	Glyma18g40617 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g40617

Paralog	Evidence	Comments
Glyma07g16411	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g40617 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g187200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g40617

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g40617

Limit To All Plant Sequences

>Glyma18g40617.2   sequence type=transcript   gene model=Glyma18g40617   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGATGAATGATGATGACCTTTGGTTGCTGAAAAAATGAATCAGCGAGAAAAATAGGATTTTGATTTTTGGGATGTGTGTTCTTCTATGCTGAGCTGTTTTTTAAGGCTTAATTCATAGTTTAGACCTTTGGGGTTTTTCTTCTAAAATCACTTTGTTGGAGTTTGTCTGCAAGTTGCTTCAAAATGGCACAAAAAATGGAAATAGTGAGCACTTCTGGTCATCATTGATTGTGACAGCACGGCTCTAAACACATACTCTCTCATAGTCTTGTGTTGGAGGAGCCAAGCAATGACTGTTTTCATGCTCCTATGTGCAACAGGGCCACCGATCAAAAGAAGAGCGGGTTTGAGAATTAAACAAGCAGGGAGAGGTTCATACAGAGGAAGCTAGGCGTGTGTTTGAAGTTGCTATTGGGTTTTTCTTTTGTTTTTCTTCTTTGTTTTGCGTAGTCCTGGAAAGTAGAACAGAAAGATGGATGCCACTTCTATAATGCATTTGTTGAAGGGCTTTTGTGATCACACACAATGGAAATATGCTGGTTTTTGGAAGCTTGACCAACATTTTCCTATGACGTTGACCTGGGAAAATGGTTACCAGAAAAGAGATGAGGTTAAGGAAAGTATGTGGGGTGACCTCAGTTTCAAATCCCCAGATGAGTTATATTCTTCAAGCGGTGAAAATTCTGATTATTCGGCTCGATTACTCTTGATTGAAATGTCTCATCGCAAATACAGTTTGGGAGAAGGGGTTGTTGGCAAAATAGCTCTCGCCAGGGATCATTGTTGGGTTTCATATGAGGATATTCTCACCAGTAAATTTGACACAGATTTAATCACTGAGTGTCCTGATGAGTGGCTGCTTCAATTTGCATGTGGCATCAAGACTATTGTGCTTGTACCAGTGCTTCCACAAGGGGTTTTGCAATTCGGTTCATTTGAAGCGGTTGCTGAAGACAAGGAATTTGTTACCAATATCAAGGAGAAATTCTATTCCACTCATTATCTGGAAGCAGATATTACCCCTTTAAATTTGGGAACTGATTGTCAAGATGTGTCATTCTCAGACCTAATGCATAATTTGATGGGCAGTTTGGATGAATCATCATCTTCTGTTACAAAAAGTATATTGAAAAGTGAAGTTTCAACTAGTCCTGCTGCCCTCAATTCAAATGGTTCAAGGTTGAACCCGACTATGCTATCATTTATTCAGGATGACTGTTTCTTTTCTAGAGAAAATTTACTAGAATCTCTGAAAAGAGAAAATGAAAATGAGATAGGTTCCTCATCAACTGAGATGCCAAGACATATCGGTAAGGTGGAGACAAAACCTAATCATATGGAAGAGATATGGTCCTGGTCTCACTTGCTCAACAATGTTGGAGTATTTAGAGAGATGTCAAATGGATTAGACTCTTCCTCGGTTATAAATACAACACAGAAACAACTTGGAGGCATTGAAACTGGCCATGATGCTAAGAATGTGAATGACTTCGCTTTTCCCTCAGAGTCTGAATTCCGCAAAGCACTTGGATCAGTTTCATATGGAGAGACAGGCAAATTTATGTCAAAATGTATCTCTGTTGAGGAAACATACAGTAACTCAACTCTTGTAATCAACAAAAAAGAGCATGATCATATTAAAGGTTTGGAGTTTCCCAAAGATGTTGATCTGGAATATCTTTTAGATGCTGTTGTTGGCAATTTTTGTGGTGCTGCTGCTGATACTTCAAGTATATCCAACAGTGTTAGGTCTCTTACAACCATGCCAACAGAGTTTACCAGTTCCATTCAGCCAGAAAATTATTCAGAAGAAAGCACTTTGATTGTGGATAGTTCAGATGTGAAAAATGATCTTATGCCTGCAATCATGGTCAAGGGAAAAGATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGCAAGCTTATTGATTGACGAGGCACAACAGGAAAAGGCTAATAGTCATATGCAGCCTATTGGTGGACCAAAGCTCTCTAGCTCAAGCAAGAAAAGAACAAGAGTTGGTAACAACCAAAAGTCAAGGCCAAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGAGAACTTGTCCCAGAAGGTGGTAGGTGTAGTATTGACAACCTCTTGGAACGTACCATAAAGCACATGCTGTACTTGAGAAAGATAACAAGCCAGGCTGAGAAACTGAAACGAATTGCTAATCGGGCGGTTCCCGAGTGCAAAAGACAGAAAGTCAATGCTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAAGTATCTTGGCCTATAGTCATAGAAGATCTGGAATGCTCAGGGCACATGCTCATAGAGATGATATGCAACGAGCATGGACTCTTCTTGGAGATTGCTCAGGTGATCCGGAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACTGTTCCAGCAACAGTTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGAATGGATGTTCTATGTCCTTTACTGCATCTTCTGCAGCTTAGGAGAAACCCTGTCTCTTGTAAAAGCTGACCCTACCATGCCAGTTCTCAGTTTCAAACTGCTACTTCTATTTAAAGAAGTTACAATAATATTCAAGAGGGCCTTCTTTTGTGTAATGCTGTAAATGATTGTGTTCATGCCCTCGTTAGTGTACTTGCTGCATTTTGGTGTTGATTATAAGCTAGTACCTAAATTTATGTAAACAAAAAAAGGACACTTTAGGGGTGCTACTGGCTGCGGAACAATATGCCTAGCAGGCAGTAGCTATCTTTGAACTCATTTCTGGTGTGGCATTATCATCATGACCTAAATAGATAACTATGGGAGTGTTAGCTAGAAAAGTAGAGCCTTACCGCCGCTGGATATTAAACTATGAGTATGTTATATGAGTGTAATTAAGTTGACAATTCGCGGGAGAATAACTGTTTGATTCTCACATGATATATTTTTTAGAAGAGCATGAAACTGTAAGTGTGATTAGGTTCTCGATTGAGGATTAGTTCATAGTCGATTTAAAGGACCTAAAAGTGAAATATCTTGGGATCTAACCCGGGAACCAAAGGTTCTAATTGTGGTGGTTATAAAAAAAAGTAAATTATATTAA

Coding sequences of Glyma18g40617

Limit To All Plant Sequences

>Glyma18g40617.1   sequence type=CDS   gene model=Glyma18g40617   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCCACTTCTATAATGCATTTGTTGAAGGGCTTTTGTGATCACACACAATGGAAATATGCTGGTTTTTGGAAGCTTGACCAACATTTTCCTATGACGTTGACCTGGGAAAATGGTTACCAGAAAAGAGATGAGGTTAAGGAAAGTATGTGGGGTGACCTCAGTTTCAAATCCCCAGATGAGTTATATTCTTCAAGCGGTGAAAATTCTGATTATTCGGCTCGATTACTCTTGATTGAAATGTCTCATCGCAAATACAGTTTGGGAGAAGGGGTTGTTGGCAAAATAGCTCTCGCCAGGGATCATTGTTGGGTTTCATATGAGGATATTCTCACCAGTAAATTTGACACAGATTTAATCACTGAGTGTCCTGATGAGTGGCTGCTTCAATTTGCATGTGGCATCAAGACTATTGTGCTTGTACCAGTGCTTCCACAAGGGGTTTTGCAATTCGGTTCATTTGAAGCGGTTGCTGAAGACAAGGAATTTGTTACCAATATCAAGGAGAAATTCTATTCCACTCATTATCTGGAAGCAGATATTACCCCTTTAAATTTGGGAACTGATTGTCAAGATGTGTCATTCTCAGACCTAATGCATAATTTGATGGGCAGTTTGGATGAATCATCATCTTCTGTTACAAAAAGTATATTGAAAAGTGAAGTTTCAACTAGTCCTGCTGCCCTCAATTCAAATGGTTCAAGGTTGAACCCGACTATGCTATCATTTATTCAGGATGACTGTTTCTTTTCTAGAGAAAATTTACTAGAATCTCTGAAAAGAGAAAATGAAAATGAGATAGGTTCCTCATCAACTGAGATGCCAAGACATATCGGTAAGGTGGAGACAAAACCTAATCATATGGAAGAGATATGGTCCTGGTCTCACTTGCTCAACAATGTTGGAGTATTTAGAGAGATGTCAAATGGATTAGACTCTTCCTCGGTTATAAATACAACACAGAAACAACTTGGAGGCATTGAAACTGGCCATGATGCTAAGAATGTGAATGACTTCGCTTTTCCCTCAGAGTCTGAATTCCGCAAAGCACTTGGATCAGTTTCATATGGAGAGACAGGCAAATTTATGTCAAAATGTATCTCTGTTGAGGAAACATACAGTAACTCAACTCTTGTAATCAACAAAAAAGAGCATGATCATATTAAAGGTTTGGAGTTTCCCAAAGATGTTGATCTGGAATATCTTTTAGATGCTGTTGTTGGCAATTTTTGTGGTGCTGCTGCTGATACTTCAAGTATATCCAACAGTGTTAGGTCTCTTACAACCATGCCAACAGAGTTTACCAGTTCCATTCAGCCAGAAAATTATTCAGAAGAAAGCACTTTGATTGTGGATAGTTCAGATGTGAAAAATGATCTTATGCCTGCAATCATGGTCAAGGGAAAAGATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGCAAGCTTATTGATTGACGAGGCACAACAGGAAAAGGCTAATAGTCATATGCAGCCTATTGGTGGACCAAAGCTCTCTAGCTCAAGCAAGAAAAGAACAAGAGTTGGTAACAACCAAAAGTCAAGGCCAAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGAGAACTTGTCCCAGAAGGTGGTAGGTGTAGTATTGACAACCTCTTGGAACGTACCATAAAGCACATGCTGTACTTGAGAAAGATAACAAGCCAGGCTGAGAAACTGAAACGAATTGCTAATCGGGCGGTTCCCGAGTGCAAAAGACAGAAAGTCAATGCTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAAGTATCTTGGCCTATAGTCATAGAAGATCTGGAATGCTCAGGGCACATGCTCATAGAGATGATATGCAACGAGCATGGACTCTTCTTGGAGATTGCTCAGGTGATCCGGAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACTGTTCCAGCAACAGTTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGAATGGATGTTCTATGTCCTTTACTGCATCTTCTGCAGCTTAGGAGAAACCCTGTCTCTTGTAAAAGCTGA

>Glyma18g40617.2   sequence type=CDS   gene model=Glyma18g40617   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGCCACTTCTATAATGCATTTGTTGAAGGGCTTTTGTGATCACACACAATGGAAATATGCTGGTTTTTGGAAGCTTGACCAACATTTTCCTATGACGTTGACCTGGGAAAATGGTTACCAGAAAAGAGATGAGGTTAAGGAAAGTATGTGGGGTGACCTCAGTTTCAAATCCCCAGATGAGTTATATTCTTCAAGCGGTGAAAATTCTGATTATTCGGCTCGATTACTCTTGATTGAAATGTCTCATCGCAAATACAGTTTGGGAGAAGGGGTTGTTGGCAAAATAGCTCTCGCCAGGGATCATTGTTGGGTTTCATATGAGGATATTCTCACCAGTAAATTTGACACAGATTTAATCACTGAGTGTCCTGATGAGTGGCTGCTTCAATTTGCATGTGGCATCAAGACTATTGTGCTTGTACCAGTGCTTCCACAAGGGGTTTTGCAATTCGGTTCATTTGAAGCGGTTGCTGAAGACAAGGAATTTGTTACCAATATCAAGGAGAAATTCTATTCCACTCATTATCTGGAAGCAGATATTACCCCTTTAAATTTGGGAACTGATTGTCAAGATGTGTCATTCTCAGACCTAATGCATAATTTGATGGGCAGTTTGGATGAATCATCATCTTCTGTTACAAAAAGTATATTGAAAAGTGAAGTTTCAACTAGTCCTGCTGCCCTCAATTCAAATGGTTCAAGGTTGAACCCGACTATGCTATCATTTATTCAGGATGACTGTTTCTTTTCTAGAGAAAATTTACTAGAATCTCTGAAAAGAGAAAATGAAAATGAGATAGGTTCCTCATCAACTGAGATGCCAAGACATATCGGTAAGGTGGAGACAAAACCTAATCATATGGAAGAGATATGGTCCTGGTCTCACTTGCTCAACAATGTTGGAGTATTTAGAGAGATGTCAAATGGATTAGACTCTTCCTCGGTTATAAATACAACACAGAAACAACTTGGAGGCATTGAAACTGGCCATGATGCTAAGAATGTGAATGACTTCGCTTTTCCCTCAGAGTCTGAATTCCGCAAAGCACTTGGATCAGTTTCATATGGAGAGACAGGCAAATTTATGTCAAAATGTATCTCTGTTGAGGAAACATACAGTAACTCAACTCTTGTAATCAACAAAAAAGAGCATGATCATATTAAAGGTTTGGAGTTTCCCAAAGATGTTGATCTGGAATATCTTTTAGATGCTGTTGTTGGCAATTTTTGTGGTGCTGCTGCTGATACTTCAAGTATATCCAACAGTGTTAGGTCTCTTACAACCATGCCAACAGAGTTTACCAGTTCCATTCAGCCAGAAAATTATTCAGAAGAAAGCACTTTGATTGTGGATAGTTCAGATGTGAAAAATGATCTTATGCCTGCAATCATGGTCAAGGGAAAAGATGAATTTTCTAACCATTTTACATCATCTTTTGATGGAAATGCAAGCTTATTGATTGACGAGGCACAACAGGAAAAGGCTAATAGTCATATGCAGCCTATTGGTGGACCAAAGCTCTCTAGCTCAAGCAAGAAAAGAACAAGAGTTGGTAACAACCAAAAGTCAAGGCCAAGAGATAGACAGCTGATCATGGACAGGATGAAGGAGTTGAGAGAACTTGTCCCAGAAGGTGGTAGGTGTAGTATTGACAACCTCTTGGAACGTACCATAAAGCACATGCTGTACTTGAGAAAGATAACAAGCCAGGCTGAGAAACTGAAACGAATTGCTAATCGGGCGGTTCCCGAGTGCAAAAGACAGAAAGTCAATGCTAGCCACCCAGGAAGGAGCTGTGCATTTGACTTTGAAAGTGAAGTATCTTGGCCTATAGTCATAGAAGATCTGGAATGCTCAGGGCACATGCTCATAGAGATGATATGCAACGAGCATGGACTCTTCTTGGAGATTGCTCAGGTGATCCGGAAGCTGGATGTCACCATCTTGAAAGGGATCTTGGAAAACTGTTCCAGCAACAGTTGGGCTTGTTTCATTGTTGAGGTTCCAAGAGGTTTTCACAGAATGGATGTTCTATGTCCTTTACTGCATCTTCTGCAGCTTAGGAGAAACCCTGTCTCTTGTAAAAGCTGA

Predicted protein sequences of Glyma18g40617

Limit To All Plant Sequences

>Glyma18g40617.1   sequence type=predicted peptide   gene model=Glyma18g40617   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDATSIMHLLKGFCDHTQWKYAGFWKLDQHFPMTLTWENGYQKRDEVKESMWGDLSFKSPDELYSSSGENSDYSARLLLIEMSHRKYSLGEGVVGKIALARDHCWVSYEDILTSKFDTDLITECPDEWLLQFACGIKTIVLVPVLPQGVLQFGSFEAVAEDKEFVTNIKEKFYSTHYLEADITPLNLGTDCQDVSFSDLMHNLMGSLDESSSSVTKSILKSEVSTSPAALNSNGSRLNPTMLSFIQDDCFFSRENLLESLKRENENEIGSSSTEMPRHIGKVETKPNHMEEIWSWSHLLNNVGVFREMSNGLDSSSVINTTQKQLGGIETGHDAKNVNDFAFPSESEFRKALGSVSYGETGKFMSKCISVEETYSNSTLVINKKEHDHIKGLEFPKDVDLEYLLDAVVGNFCGAAADTSSISNSVRSLTTMPTEFTSSIQPENYSEESTLIVDSSDVKNDLMPAIMVKGKDEFSNHFTSSFDGNASLLIDEAQQEKANSHMQPIGGPKLSSSSKKRTRVGNNQKSRPRDRQLIMDRMKELRELVPEGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRIANRAVPECKRQKVNASHPGRSCAFDFESEVSWPIVIEDLECSGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENCSSNSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPVSCKS*

>Glyma18g40617.2   sequence type=predicted peptide   gene model=Glyma18g40617   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDATSIMHLLKGFCDHTQWKYAGFWKLDQHFPMTLTWENGYQKRDEVKESMWGDLSFKSPDELYSSSGENSDYSARLLLIEMSHRKYSLGEGVVGKIALARDHCWVSYEDILTSKFDTDLITECPDEWLLQFACGIKTIVLVPVLPQGVLQFGSFEAVAEDKEFVTNIKEKFYSTHYLEADITPLNLGTDCQDVSFSDLMHNLMGSLDESSSSVTKSILKSEVSTSPAALNSNGSRLNPTMLSFIQDDCFFSRENLLESLKRENENEIGSSSTEMPRHIGKVETKPNHMEEIWSWSHLLNNVGVFREMSNGLDSSSVINTTQKQLGGIETGHDAKNVNDFAFPSESEFRKALGSVSYGETGKFMSKCISVEETYSNSTLVINKKEHDHIKGLEFPKDVDLEYLLDAVVGNFCGAAADTSSISNSVRSLTTMPTEFTSSIQPENYSEESTLIVDSSDVKNDLMPAIMVKGKDEFSNHFTSSFDGNASLLIDEAQQEKANSHMQPIGGPKLSSSSKKRTRVGNNQKSRPRDRQLIMDRMKELRELVPEGGRCSIDNLLERTIKHMLYLRKITSQAEKLKRIANRAVPECKRQKVNASHPGRSCAFDFESEVSWPIVIEDLECSGHMLIEMICNEHGLFLEIAQVIRKLDVTILKGILENCSSNSWACFIVEVPRGFHRMDVLCPLLHLLQLRRNPVSCKS*

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