Glyma18g40575 - SoyBase

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Report for Sequence Feature Glyma18g40575

Feature Type:	gene_model
Chromosome:	Gm18
Start:	49230316
stop:	49239738
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g40575

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45000	AT	Annotation by Michelle Graham. TAIR10: AAA-type ATPase family protein \| chr1:17009220-17011607 FORWARD LENGTH=335	SoyBase	E_val: 1.00E-114	ISS
GO:0030163	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein catabolic process	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048193	GO-bp	Annotation by Michelle Graham. GO Biological Process: Golgi vesicle transport	SoyBase	N/A	ISS
GO:0000502	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: proteasome complex	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005730	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleolus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
KOG0651	KOG	26S proteasome regulatory complex, ATPase RPT4	JGI		ISS
PTHR23073	Panther	26S PROTEASE REGULATORY SUBUNIT	JGI		ISS
PTHR23073:SF10	Panther	26S PROTEASE REGULATORY SUBUNIT S10B	JGI		ISS
PF00004	PFAM	ATPase family associated with various cellular activities (AAA)	JGI		ISS
UniRef100_B9R7Z7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 26S protease regulatory subunit S10b, putative n=2 Tax=fabids RepID=B9R7Z7_RICCO	SoyBase	E_val: 2.00E-114	ISS
UniRef100_UPI000233E281	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E281 related cluster n=1 Tax=unknown RepID=UPI000233E281	SoyBase	E_val: 9.00E-137	ISS

Expression Patterns of Glyma18g40575

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g40575 not represented in the dataset	Glyma18g40575 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g40575 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g186900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g40575

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g40575

Limit To All Plant Sequences

>Glyma18g40575.1   sequence type=CDS   gene model=Glyma18g40575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCTCATGCGTTTTGACGGCAAGTACTAGTGCAACCTCTTGGACTCGCGCATGGGCAAAACCACTTGGCCTTACGGCTCCGACATCTGGAGCAAAAAAGAGTGGGTCCTCCCCGAGATCTACGACAACGACATCGTCTCCACCTTCGAGGGCAACTCCAACCTCTTATGGGCTGAGCGTTTCGATAACGGCACGAACGATTTGTGGGTCAAACACTGTGGAATCAGCCACACCGGCACCTTCAAGGATCTCGACCATTGAAGTTGAGCACTACATTTGCCTCTGGCATTCAAATCAGATGAGGCTTTTGAGGTTTGCAGGAGAATTGGATAAGGAAAAATTGACTTCTAGGACAAGGGTGGTTCTCGATATGACTACACTCACCATAAGACGAGCTCTTCCTCGAGAAGTAATTCATATGGTTTACAATATGTTGCATGAAGATCCTGGTAATATCATCTATTTAGTTGTTGATGGCTTATCTGATTGGGAATTGAGGGAGTCAATTGAACTACCTCTGATGAATCATGAGCTCTTTCTTCGAGTTGGAATTAAACCTCCAAAGATTTTTAGTGTTCTCCTTTACGGGCCTCCTGGTACTGGTAAAACATTATTAGCCAGGGTTATTGCCAGTAATATAGATGCTAACTTCCTAAAGGTTGTTTCGGCCAGTGCCATAATTGACAAGTACATTGGAGAAAATGCCAAGTTAATGAGAGAGATGTTTGGTTATGCACGTGATCACCAGTCGTGCATCATTTTTATGGATGAGATTGATGCCATTGGAGGTCGTCGTTTCAATGAGGGAACAAGTGCAGATCGTGAAATTCAGAGAACGCTAATGGAGCTGCTTAATCAACTTAATGGATTTGATCAACTTCGAAAGCATGGTGAAATAGACTATGAAGTTGTTGTGAAGCTTGCATCTGGAATGGCAGCAATTCGGGCAGAGCGTGATTATGTGGTCCATGAAGATTTTATGAAGACAAAGATGATGAGTCCCGATTATTTTATGAATAATTATGAAAAAAATTAA

Predicted protein sequences of Glyma18g40575

Limit To All Plant Sequences

>Glyma18g40575.1   sequence type=predicted peptide   gene model=Glyma18g40575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPSCVLTASTSATSWTRAWAKPLGLTAPTSGAKKSGSSPRSTTTTSSPPSRATPTSYGLSVSITARTICGSNTVESATPAPSRISTIEVEHYICLWHSNQMRLLRFAGELDKEKLTSRTRVVLDMTTLTIRRALPREVIHMVYNMLHEDPGNIIYLVVDGLSDWELRESIELPLMNHELFLRVGIKPPKIFSVLLYGPPGTGKTLLARVIASNIDANFLKVVSASAIIDKYIGENAKLMREMFGYARDHQSCIIFMDEIDAIGGRRFNEGTSADREIQRTLMELLNQLNGFDQLRKHGEIDYEVVVKLASGMAAIRAERDYVVHEDFMKTKMMSPDYFMNNYEKN*

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