SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G06060 | AT | Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr5:1824066-1825833 REVERSE LENGTH=264 | SoyBase | E_val: 3.00E-111 | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| GO:0016491 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity | SoyBase | N/A | ISS |
| KOG0725 | KOG | Reductases with broad range of substrate specificities | JGI | ISS | |
| PTHR24310 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24310:SF66 | Panther | JGI | ISS | ||
| PF00106 | PFAM | short chain dehydrogenase | JGI | ISS | |
| UniRef100_C6SY07 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SY07_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_P50165 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Tropinone reductase homolog n=1 Tax=Datura stramonium RepID=TRNH_DATST | SoyBase | E_val: 5.00E-111 | ISS |
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Glyma18g40560 not represented in the dataset |
Glyma18g40560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g16340 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g186800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g40560.1 sequence type=CDS gene model=Glyma18g40560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCAGAAACAAAGTTGAGCTCCTTCAAAGACAAAAGATGGTCACTCCATGGCATGACAGCTCTAGTGACAGGAGGCACACGAGGCATAGGGTACGCAATAGCTGAAGAGTTAGCAGAATTTGGGGCAGCTGTGCATATTTGTGCACGTAAACAACAAGATATTGATAAATGTTTAGAAGAATGGAATAAGAAAGGACTTCCCATAACAGGGTCGGCATGTGATGTACTATCTCGTGACCAACGTGAAAATTTAATGAAAAATGTTGCTTCAATCTTTAACGGGAAGCTCAACATTCTGATAAACAATGCTGGAACAACTACACCTAAGAATCTCATAGATTATACTGCAGAAGATGTAACGACAATAATGGAAACTAATTTTGGGTCTAGTTACCACTTATGTCAACTAGCACATCCACTTCTAAAAGCATCTGGATATGGGAGCATAGTGTTTATATCCTCCATTGCAGGTCTGAAAGCTTTGCCTTACAGTTCTGTGTATGCATCCTCTAAAGGAGCTATGAATCAATTCACTAAGAACATAGCATTGGAATGGGCAAAGGATAATATTCGCGCAAATGCTGTGGCACCGGGGACTGTTAAGACTGTACTTCTGGATTCTATCATGAAAGCTGCTGCTGAAGCTGATAAAGCCGTTGAGTATATAGTGTCTCAAACACCAGTTGGTAGACTTGGAGATCCCGAGGACATATCACCACTGGTTGCTTTCCTTTGCCTTCCAGCTGCTTCATACATCACTGGCCAGATTATTACTGCGGATGGGGGTTACATAATTTAA
>Glyma18g40560.1 sequence type=predicted peptide gene model=Glyma18g40560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAETKLSSFKDKRWSLHGMTALVTGGTRGIGYAIAEELAEFGAAVHICARKQQDIDKCLEEWNKKGLPITGSACDVLSRDQRENLMKNVASIFNGKLNILINNAGTTTPKNLIDYTAEDVTTIMETNFGSSYHLCQLAHPLLKASGYGSIVFISSIAGLKALPYSSVYASSKGAMNQFTKNIALEWAKDNIRANAVAPGTVKTVLLDSIMKAAAEADKAVEYIVSQTPVGRLGDPEDISPLVAFLCLPAASYITGQIITADGGYII*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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