SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g40451

Feature Type:gene_model
Chromosome:Gm18
Start:49079965
stop:49082778
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g40451
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G46240AT Annotation by Michelle Graham. TAIR10: BCL-2-associated athanogene 6 | chr2:18986586-18989827 FORWARD LENGTH=1043 SoyBaseE_val: 4.00E-25ISS
GO:0006457GO-bp Annotation by Michelle Graham. GO Biological Process: protein folding SoyBaseN/AISS
GO:0009408GO-bp Annotation by Michelle Graham. GO Biological Process: response to heat SoyBaseN/AISS
GO:0009644GO-bp Annotation by Michelle Graham. GO Biological Process: response to high light intensity SoyBaseN/AISS
GO:0010228GO-bp Annotation by Michelle Graham. GO Biological Process: vegetative to reproductive phase transition of meristem SoyBaseN/AISS
GO:0010286GO-bp Annotation by Michelle Graham. GO Biological Process: heat acclimation SoyBaseN/AISS
GO:0012502GO-bp Annotation by Michelle Graham. GO Biological Process: induction of programmed cell death SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0042542GO-bp Annotation by Michelle Graham. GO Biological Process: response to hydrogen peroxide SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009506GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma SoyBaseN/AISS
GO:0005516GO-mf Annotation by Michelle Graham. GO Molecular Function: calmodulin binding SoyBaseN/AISS
GO:0051087GO-mf Annotation by Michelle Graham. GO Molecular Function: chaperone binding SoyBaseN/AISS
PF00612PFAM IQ calmodulin-binding motif JGI ISS
PF02179PFAM BAG domain JGI ISS
UniRef100_I1KI14UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KI14_SOYBN SoyBaseE_val: 0ISS
UniRef100_O82345UniRef Annotation by Michelle Graham. Most informative UniRef hit: BAG family molecular chaperone regulator 6 n=1 Tax=Arabidopsis thaliana RepID=BAG6_ARATH SoyBaseE_val: 2.00E-22ISS

Expression Patterns of Glyma18g40451
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g40451 not represented in the dataset
Glyma18g40451 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g40451 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g186200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g40451
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g40451
>Glyma18g40451.1   sequence type=CDS   gene model=Glyma18g40451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGCACCTATCAATCATATTGATGATACTTATGCCACTTGGCACTTACACTTACACATAGAGTTTGTACCTTCCAGTGACACACAGAAGGAGGAGACACCAGAGATGGTTGCTGAAGAGGCAATTAGTGCTGATGATAAAGACACAGAAACTTTGGCCCAAGAGAAAACTGAAGTATCTGCTGCACCACCTGCATTGCAAGAGAAAAATGGCCACGGGAGTTCGAGTTCGAGGTCCCCAAGTCCACCTTCATCAAAAGGGAATTCCCAAGCTACAACTAGTGAAACAGTCAAGACTCCTGTGAGTGGCACACGTGACAAGGCTCAACCAAATTTGAATCATCAGAATGCTCCAAACACCAGTGCGAAAGTTAAACCAAAGGAGAACACCATTCTGGTGTCAGAATGCATGACTAATGAAAACAAGGGTGTTGACTGTAGGGATGGATGTCAGAGCCAGATGAAAGTAAACATACCCAGTGAATGTCTGAAAGGGGCAAGGGAAACATGTCCAGATGATGATGACTATAAGACTGAAGATAAAAAGGCAGAGAAAGGAGCAGAAAATATGATGGAGGAAACTACTGAATCAAGGGAAGAGAAGGATTCAAGCACACAAACTGATGCAGGTCGAAAAGAAGGAAGAGTTTTGTCAGATGCAGATGCTGCTGTTTTCATACAAGCTGCATATCGCAGTTATCTAGTTAGAAAATGGGAACTGTTGAAGAAGTTGAAGCAGATAGATGAAGTCAGGAAGGAGGTGACTCATGTTCAAGGTCGTGTTCAAGCTTTTGAGAGATCTCTCGAACTTCAAAATGATGACAAACAAAAAATTGCAATTGGAGAGACCATAATGAGACTCCTGCTGAAGTTGGATACTATACTGGGTTTGCATCCATGTTTCAGGGAGATCAGAAAATCCTTGGCTAGGGAGCTCATAATCTTGCAAGAAAGGCTTGATTCTATAATAGCCAAGAAACCTCAGCAGCAGATGCCGGATGCCGATGTTCAGGAACACGTTGAAATCACTCCAATGAACATGCAAAGTGAAGAACATGTGCAAAAGCAGCAAGAAGAAAAGGTTGTTGTACCAGAAGATTCAGCTGAAGGCACTAGGGATGATGTAAAAGGTCCTTGTGCTAATGATGGTGGAAGTGAATCTCAGTCACCAGTTGATCCTCCATCAAATGAGGGAGCAGAGTCTGTTGCACTTCCAAATGGCTCAGATAATGAAGACACCAGCCAAGTGGTTACATCTGATGCATTGAATTCTTCAAGTGATCTGTCTGAGAGTGACAAAATGGCTGTGGAATCCGAAGCTAAATCAGAAGCGAAAGACAATCCGATTGCGGAAGACATTCCCATTGAGGTTGATAAATTGGACAAGACTGTTTGGGAAGAATTGCTTGTGGGAGTTATTGATGAAGATATCAATGATGTTAGTATTGAGAAGGAAGAACATGATGATGTTAGATCTGGAAGTCTCCCAGCCATGGTGAATGATTCGGCACAAGAAGGATCAGATTCAGAGAACTATGCAATGATGGAGCTGCCATTGGGATTACATGAGGAGCATGAAAGGGACAATGAAATGAATATTTCTAATGGAGAAACATGGTCTGAGAATGAGATATTTATTGAGGAGCTTCATGTGGGACTGCACGATGAGGATACAACAATATCTAAAGATAAGAGGGATGATCAAGCTAAGCCTAAAACATATAAAGGGGTTCTACTAGCTCAAGAAGGGGAATACAATGCAGATGAGGAAACAAGTTCTTCCATAGATGACACTGCAAACGAAACTCAACTAGAGCAACAGCAGAAGCTGAAAGAGCAAGAGGAGGTGCATTCTTCTAGGGTAAAAATTGAGTACCTGAAAGAAGGTGAACTCAATGGTGATGCACCAATGGATATAAGAGTTGAGTGCAAGTCAGGTGAGGAAGCTGGAACTGATACTAAGTTGCTTCCTTTGACAACACAAGTCAGTGATAATGAACCAGAAAATGAAGATGTATTCTCAGAAGCAAATTATGTAAATAACAAATTAACCGAGCCAATGGAGTTTGTACCTTCCAATGACACACAGACGGAGGAGACACCAAAGATGGTTGCTGAAGAGGCAATTAGTGTTGATGATAAATAA
Predicted protein sequences of Glyma18g40451
>Glyma18g40451.1   sequence type=predicted peptide   gene model=Glyma18g40451   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHAPINHIDDTYATWHLHLHIEFVPSSDTQKEETPEMVAEEAISADDKDTETLAQEKTEVSAAPPALQEKNGHGSSSSRSPSPPSSKGNSQATTSETVKTPVSGTRDKAQPNLNHQNAPNTSAKVKPKENTILVSECMTNENKGVDCRDGCQSQMKVNIPSECLKGARETCPDDDDYKTEDKKAEKGAENMMEETTESREEKDSSTQTDAGRKEGRVLSDADAAVFIQAAYRSYLVRKWELLKKLKQIDEVRKEVTHVQGRVQAFERSLELQNDDKQKIAIGETIMRLLLKLDTILGLHPCFREIRKSLARELIILQERLDSIIAKKPQQQMPDADVQEHVEITPMNMQSEEHVQKQQEEKVVVPEDSAEGTRDDVKGPCANDGGSESQSPVDPPSNEGAESVALPNGSDNEDTSQVVTSDALNSSSDLSESDKMAVESEAKSEAKDNPIAEDIPIEVDKLDKTVWEELLVGVIDEDINDVSIEKEEHDDVRSGSLPAMVNDSAQEGSDSENYAMMELPLGLHEEHERDNEMNISNGETWSENEIFIEELHVGLHDEDTTISKDKRDDQAKPKTYKGVLLAQEGEYNADEETSSSIDDTANETQLEQQQKLKEQEEVHSSRVKIEYLKEGELNGDAPMDIRVECKSGEEAGTDTKLLPLTTQVSDNEPENEDVFSEANYVNNKLTEPMEFVPSNDTQTEETPKMVAEEAISVDDK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo