Report for Sequence Feature Glyma18g40220
Feature Type: gene_model
Chromosome: Gm18
Start: 48756502
stop: 48757649
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g40220
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G29765 AT
Annotation by Michelle Graham. TAIR10: General transcription factor 2-related zinc finger protein | chr3:11595467-11597077 REVERSE LENGTH=536
SoyBase E_val: 3.00E-87 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
PTHR11697 Panther
GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN
JGI ISS
PTHR11697:SF9 Panther
TRANSPOSASE-LIKE PROTEIN
JGI ISS
PF05699 PFAM
hAT family dimerisation domain
JGI ISS
UniRef100_G7KPQ8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger MYM-type protein n=1 Tax=Medicago truncatula RepID=G7KPQ8_MEDTR
SoyBase E_val: 7.00E-167 ISS
UniRef100_I1N2K2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2K2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g40220
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Gene model name correspondences to Glyma18g40220 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g185000 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g40220
Coding sequences of Glyma18g40220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g40220.2 sequence type=CDS gene model=Glyma18g40220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGACTGCTCCTACGATTCAAAAGGATAGAGACAAGAATTGCTTCGGAACAAACAAATTGATTGAAGAGGGTCAGATAGAGACTGGTAGTGGATTAAATCAAGAATCATCTATTACTAAAGCGGGTGACACTCGTTGGGGTTCTCACTTTAGGACTTTCACTAGTTTGATGACTATATATGGTGCCATTATTAAGGTACTTGAAGAAGTCAGGAAAGATACGTCATTTGAAAAATATGGTGAAACTATGGTTTTGCTAGATGTGCTTCAGTCCTTTGATTTTATTTTCATGTTATACCTGATGGTTGAGATTTTAGGATTTACAAATGATTTAAGTGTAGTGCTACAAAAGCGTGATCAAGATCAAGATCTTTTGAATGCTTTATCACTTGTCAAAGCCACCAAAGAAGAATTACAAGAAATGAGGAATGATGGATGGGAAGAACTTATATCTAAGGTTATGGAAATTTGCAATAAGCATGATATTGATGTGCCTGATTTGGATGCACTGTATGTACAAGGGAAGAAACCTAGACGACATGCTACCACTTCTAGTGTTTCTGATTTGCATCATTATAAGCATGATTATTTATTTAGTATTTTAGATTTGCAGTTGCATGAGATCAATGATAGTCCCTCATCATCATTTGAAGCTTTTGATGTGAAAAAATTATTGAGGATGGTTGAACTTTATCCAAATGATTTTGTAGATGTGCCGAAAGTGGTGGTGCGACATCAGCTTCAGAATTATGTTAGAAATGTTCGATGTGATCCAAAATTTGCAAAGTTAAAAGGACTTTCAGACCTTTGTGCAAAGCTTGTGAAAACAAAAAAGTGCAACACATTTGATATAGTTTATAGGCTTCAGAAGTTGGCTTTAGTCTTGCCAGTAGCAACTGCAAGTGTGAAACGTGTTTTTTCAGCTATGAAGTTTGTGAAGAGTCAACTATGTAACAAAATGGATGATCAATGGTTAAATAATCGTCTTGTAACTTTTATAGAAAGAGATGTTCTTGGAACAATCAACAATGATGTTATTTTAGCTCATTTTCAAAAAATGGATAGTAGACGATTTTTATTGTAA
Predicted protein sequences of Glyma18g40220
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g40220.2 sequence type=predicted peptide gene model=Glyma18g40220 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MTAPTIQKDRDKNCFGTNKLIEEGQIETGSGLNQESSITKAGDTRWGSHFRTFTSLMTIYGAIIKVLEEVRKDTSFEKYGETMVLLDVLQSFDFIFMLYLMVEILGFTNDLSVVLQKRDQDQDLLNALSLVKATKEELQEMRNDGWEELISKVMEICNKHDIDVPDLDALYVQGKKPRRHATTSSVSDLHHYKHDYLFSILDLQLHEINDSPSSSFEAFDVKKLLRMVELYPNDFVDVPKVVVRHQLQNYVRNVRCDPKFAKLKGLSDLCAKLVKTKKCNTFDIVYRLQKLALVLPVATASVKRVFSAMKFVKSQLCNKMDDQWLNNRLVTFIERDVLGTINNDVILAHFQKMDSRRFLL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
