Glyma18g40180 - SoyBase

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Report for Sequence Feature Glyma18g40180

Feature Type:	gene_model
Chromosome:	Gm18
Start:	48724142
stop:	48730830
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g40180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G23980	AT	Annotation by Michelle Graham. TAIR10: auxin response factor 9 \| chr4:12451592-12454737 FORWARD LENGTH=636	SoyBase	E_val: 0	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009725	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to hormone stimulus	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF02309	PFAM	AUX/IAA family	JGI		ISS
PF02362	PFAM	B3 DNA binding domain	JGI		ISS
PF06507	PFAM	Auxin response factor	JGI		ISS
UniRef100_G7JUG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Auxin response factor n=1 Tax=Medicago truncatula RepID=G7JUG1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EFA9	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EFA9 related cluster n=1 Tax=unknown RepID=UPI000233EFA9	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g40180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g40180

Paralog	Evidence	Comments
Glyma07g16170	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g40180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g184500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g40180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g40180

Limit To All Plant Sequences

>Glyma18g40180.1   sequence type=CDS   gene model=Glyma18g40180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTTGAACCGTGGTGGAGGAGGAGAAGAAGATGAACTCTATGAGCAACTATGGAAAGCGTGTGCAGGACCCCATGTGGAAGTTCCTCGTACTGGCCAAAGGGTCTTCTATTTCCCTCAGGGGCACATGGAACAATTAGAAGTATCAACAAATCAGGAACTAAACCAAAGGATTCCACTCTTCAAGCTTCCCTCCAAGATCCTTTGTCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTAGTGCCGGAATCTAATCAAGCTGAGCCTATGAGCCCTGATCCGTGCCCTGCTGAACTTCCAAGTCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACTGCCTCTGATACAAGCACCCATGGTGGCTTCTCTGTCCTCAGGAAGCATGCCACTGAATGCCTTCCAGCTTTGGACATGTCTAAATCAACCCCAACTCAGGAATTGGTTGCCAAGGATCTTCAGGGCTATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCACGTAGACACTTGCTCACAACTGGATGGAGTAATTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTCTGAGAGGGAACAATGGAGAATTGCGGGTTGGAGTGAGGCGCATTGCTCCTGTGCAGAGCAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCTGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGGCAAGCCAGTTCATTGTTAGTGTGAACAAGTATTTGGAGGCTATCAACCAAAAATGTAATGTTGGTATGAGATTCAAGACAAGGTTTGAAGGGGATGAATCCCCTGAAAATTACAAAAGATTTTCGGGCACAATAGTTGGAGTAGAGGATATTTCCCCTCACTGGGTAAATTCAAATTGGCGATCTCTTAAGGTTCAATGGGATGAACCTGCATCTTTTCCAAGACCTGATAGAGTTTTACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACTACATCATCTCAAACTGCTGCTATAAAGAATAAAAGGCCACGGCAAGCAAGTGAACTTGCAGATCTTGGAGACACACCATTAGCTTTCCCTACTTTCTGGGATGCTGGACTGACACAGTCTGATATGGCAAAACTTAGTGTCATGGCCGAAATCAAAAGGAGTGACAGTAGTTCCCATATGTGGCATCATAACAGTAAAAGCAGCAACAATGGTATATCAATGAATCAGACAGAAGCAAGTTGGCTATCTTCTCCTTCTCAATTATATCATGACACAACCGATGATAGCAAGAGCATCTCAGCTTGGCCTATTTCAAAACCTCACTCAGAGAGATTGAACAATGATCATTTCCTTGACCAGGTTGACAAGGAGATCAACAAAGTAGAGGCTGCTACAAGTTATAGATTGTTTGGGATTGACCTTATTGATCATGCAAGGAACAACTCTCTTTCTGCAGAGAATGCATCTGGAATCACCTCTGAGTGCAAAATTGATGTAAACCATGTGTCCGATATCTCAAAGGCTTCTAAAGAATGGAACCAAGAACAGCTACAACTATCTCCAAAAGAGACTCAAAGCAAACAAGTTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCCGTGGATTTGACCACATTGGATGGATATGATCAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAACTTCAACTTAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCTTGAATTCTGTAAAATGGTGAGAAGAATCTTCATTTATTCAAGCCAGGATGTGCACAAATTGAGCTCAGGGAGCAAACTACCTATCTCTTCTATGGAAGAGATTGTAACAAGTTTAGACACAACCGAGACCTGA

Predicted protein sequences of Glyma18g40180

Limit To All Plant Sequences

>Glyma18g40180.1   sequence type=predicted peptide   gene model=Glyma18g40180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSLNRGGGGEEDELYEQLWKACAGPHVEVPRTGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSKILCRVVNVHLLAEQETDEVYAQITLVPESNQAEPMSPDPCPAELPSPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLQGYEWRFKHIFRGQPRRHLLTTGWSNFVTSKRLVAGDTFVFLRGNNGELRVGVRRIAPVQSSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRASQFIVSVNKYLEAINQKCNVGMRFKTRFEGDESPENYKRFSGTIVGVEDISPHWVNSNWRSLKVQWDEPASFPRPDRVLPWEIEPILASVPTTSSQTAAIKNKRPRQASELADLGDTPLAFPTFWDAGLTQSDMAKLSVMAEIKRSDSSSHMWHHNSKSSNNGISMNQTEASWLSSPSQLYHDTTDDSKSISAWPISKPHSERLNNDHFLDQVDKEINKVEAATSYRLFGIDLIDHARNNSLSAENASGITSECKIDVNHVSDISKASKEWNQEQLQLSPKETQSKQVCSRSCTKVQMQGVAVGRAVDLTTLDGYDQLVDELEKMFDIKGQLQLRNKWEIVFTDDEGDMMLVGDDPWLEFCKMVRRIFIYSSQDVHKLSSGSKLPISSMEEIVTSLDTTET*

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