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Report for Sequence Feature Glyma18g40115

Feature Type:gene_model
Chromosome:Gm18
Start:48634610
stop:48635648
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g40115
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G35700AT Annotation by Michelle Graham. TAIR10: fimbrin-like protein 2 | chr5:13872833-13876432 REVERSE LENGTH=687 SoyBaseE_val: 2.00E-13ISS
GO:0009846GO-bp Annotation by Michelle Graham. GO Biological Process: pollen germination SoyBaseN/AISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
GO:0030036GO-bp Annotation by Michelle Graham. GO Biological Process: actin cytoskeleton organization SoyBaseN/AISS
GO:0030048GO-bp Annotation by Michelle Graham. GO Biological Process: actin filament-based movement SoyBaseN/AISS
GO:0051645GO-bp Annotation by Michelle Graham. GO Biological Process: Golgi localization SoyBaseN/AISS
GO:0051646GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondrion localization SoyBaseN/AISS
GO:0060151GO-bp Annotation by Michelle Graham. GO Biological Process: peroxisome localization SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003779GO-mf Annotation by Michelle Graham. GO Molecular Function: actin binding SoyBaseN/AISS
GO:0051015GO-mf Annotation by Michelle Graham. GO Molecular Function: actin filament binding SoyBaseN/AISS
PTHR19961Panther FIMBRIN/PLASTIN JGI ISS
PTHR19961:SF9Panther FIMBRIN-RELATED JGI ISS
UniRef100_C6TLX8UniRef Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TLX8_SOYBN SoyBaseE_val: 1.00E-40ISS
UniRef100_G7K508UniRef Annotation by Michelle Graham. Most informative UniRef hit: Fimbrin/plastin-like protein n=1 Tax=Medicago truncatula RepID=G7K508_MEDTR SoyBaseE_val: 2.00E-19ISS

Expression Patterns of Glyma18g40115
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g40115 not represented in the dataset
Glyma18g40115 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g40115 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g184100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g40115
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g40115
>Glyma18g40115.2   sequence type=transcript   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAAAATCATAAAATTATTATAACTTCAAAGTATCATCAGAGAGTGTAACACCTCAGTCACATCTTAATTAAGGTGCTACAAAATAAAAAGGTCCTTTCATTTTTTTTCTCCCTATCCCATTCCCTCTCTCGCACAATCAAACAAACACAAGCCTCTATACGAAGCCTTTTAATCTCGCTCTCATTTTCTGACTTTCTCAGCTCAATGTTGTTCCGAGTGTTTGTTGTTTTTCTCCAACCGAGTCGAACATGTCTAGTTTCGTCGGTGTCCTTGTTTCTGATCCATGGCTTCAGAGCCAGTTCACTCAAGTCGAACTTCAAACCCTCAAATCCAAGAAAGGACTCAATCAGGACGTGTTACTGTCGGAAATTTTCGACCTATTTTTAAGAAATTGAAGGGTTTCTCTGAACTGTTCACTGAGGATGAGATTAAGGATGCCTTGGCAGAGTCACATCAGAACATGGATGAAGAGATTGATTTTGAGTCCTTCCTTAGGGTGAGTTTTTGTTTTTTATTTTTATTTTACCCACTGAGAAGTTGAGGCATGATTTCAGCCGAACTAAATCTTGTATGACATTTTTTCTCTTATTCACCAATTTGCTTCCCAATTTTACTATCATAATTTGTCAAAACAATAGTGTTTCACATTGTTTGGTTAGGACAATGTCTAAGGACAACAAATATACTCTCTCATCAGAAAAATAAAAGCTACAAAAAATCAATTCAACACTTGCTGTC

>Glyma18g40115.3   sequence type=transcript   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAAAATAAAATAAAATAAATTATTCAAGTAAGAAAAAATCATAAAATTATTATAACTTCAAAGTATCATCAGAGAGTGTAACACCTCAGTCACATCTTAATTAAGGTGCTACAAAATAAAAAGGTCCTTTCATTTTTTTTCTCCCTATCCCATTCCCTCTCTCGCACAATCAAACAAACACAAGCCTCTATACGAAGCCTTTTAATCTCGCTCTCATTTTCTGACTTTCTCAGGTACGTTTTCTCAATTCTCCTTTCCCAATCGCTTCGTGCCAGCCTTGTCGCAATCTACTGTTGGATCGGTGTAATTTAAATATTCACGCATCGTTGATTTGATTTCAAAACAAATGTGTTATTTCTATTGGCTTTTAAACGTTTGATTTTCGTGTGTTAGCTCAATGTTGTTCCGAGTGTTTGTTGTTTTTCTCCAACCGAGTCGAACATGTCTAGTTTCGTCGGTGTCCTTGTTTCTGATCCATGGCTTCAGAGCCAGTTCACTCAAGTCGAACTTCAAACCCTCAAATCCAAGAAAGGACTCAATCAGGACGTGTTACTGTCGGAAATTTTCGACCTATTTTTAAGAAATTGAAGGGTTTCTCTGAACTGTTCACTGAGGATGAGATTAAGGATGCCTTGGCAGAGTCACATCAGAACATGGATGAAGAGATTGATTTTGAGTCCTTCCTTAGGGTGAGTTTTTGTTTTTTATTTTTATTTTACCCACTGAGAAGTTGAGGCATGATTTCAGCCGAACTAAATCTTGTATGACATTTTTTCTCTTATTCACCAATTTGCTTCCCAATTTTACTATCATAATTTGTCAAAACAATAGTGTTTCACATTGTTTGGTTAGGACAATGTCTAAGGACAACAAATATACTCTCTCATCAGAAAAATAAAAGCTACAAAAAATCAATTCAACACTTGCTGTC
Coding sequences of Glyma18g40115
>Glyma18g40115.1   sequence type=CDS   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGTTCCGAGTGTTTGTTGTTTTTCTCCAACCGAGTCGAACATGTCTAGTTTCGTCGGTGTCCTTGTTTCTGATCCATGGCTTCAGAGCCAGTTCACTCAAGTCGAACTTCAAACCCTCAAATCCAAGGACTCAATCAGGACGTGTTACTGTCGGAAATTTTCGACCTATTTTTAAGAAATTGAAGGGTTTCTCTGAACTGTTCACTGAGGATGAGATTAAGGATGCCTTGGCAGAGTCACATCAGAACATGGATGAAGAGATTGATTTTGAGTCCTTCCTTAGGGTGAGTTTTTGTTTTTTATTTTTATTTTACCCACTGAGAAGTTGA

>Glyma18g40115.2   sequence type=CDS   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGAGCCAGTTCACTCAAGTCGAACTTCAAACCCTCAAATCCAAGAAAGGACTCAATCAGGACGTGTTACTGTCGGAAATTTTCGACCTATTTTTAAGAAATTGAAGGGTTTCTCTGAACTGTTCACTGAGGATGAGATTAAGGATGCCTTGGCAGAGTCACATCAGAACATGGATGAAGAGATTGATTTTGAGTCCTTCCTTAGGGTGAGTTTTTGTTTTTTATTTTTATTTTACCCACTGAGAAGTTGA

>Glyma18g40115.3   sequence type=CDS   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCAGAGCCAGTTCACTCAAGTCGAACTTCAAACCCTCAAATCCAAGAAAGGACTCAATCAGGACGTGTTACTGTCGGAAATTTTCGACCTATTTTTAAGAAATTGAAGGGTTTCTCTGAACTGTTCACTGAGGATGAGATTAAGGATGCCTTGGCAGAGTCACATCAGAACATGGATGAAGAGATTGATTTTGAGTCCTTCCTTAGGGTGAGTTTTTGTTTTTTATTTTTATTTTACCCACTGAGAAGTTGA
Predicted protein sequences of Glyma18g40115
>Glyma18g40115.1   sequence type=predicted peptide   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLFRVFVVFLQPSRTCLVSSVSLFLIHGFRASSLKSNFKPSNPRTQSGRVTVGNFRPIFKKLKGFSELFTEDEIKDALAESHQNMDEEIDFESFLRVSFCFLFLFYPLRS*

>Glyma18g40115.2   sequence type=predicted peptide   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEPVHSSRTSNPQIQERTQSGRVTVGNFRPIFKKLKGFSELFTEDEIKDALAESHQNMDEEIDFESFLRVSFCFLFLFYPLRS*

>Glyma18g40115.3   sequence type=predicted peptide   gene model=Glyma18g40115   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASEPVHSSRTSNPQIQERTQSGRVTVGNFRPIFKKLKGFSELFTEDEIKDALAESHQNMDEEIDFESFLRVSFCFLFLFYPLRS*






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