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Report for Sequence Feature Glyma18g40100

Feature Type:gene_model
Chromosome:Gm18
Start:48594952
stop:48596451
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g40100
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G02160AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 121 Blast hits to 121 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 121; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:426392-427024 FORWARD LENGTH=129 SoyBaseE_val: 9.00E-45ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0030003GO-bp Annotation by Michelle Graham. GO Biological Process: cellular cation homeostasis SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0043085GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of catalytic activity SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0070838GO-bp Annotation by Michelle Graham. GO Biological Process: divalent metal ion transport SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009535GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast thylakoid membrane SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_C6SZ54UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SZ54_SOYBN SoyBaseE_val: 3.00E-95ISS
UniRef100_Q9FPH2UniRef Annotation by Michelle Graham. Most informative UniRef hit: AT5g02160 n=1 Tax=Arabidopsis thaliana RepID=Q9FPH2_ARATH SoyBaseE_val: 4.00E-42ISS

Expression Patterns of Glyma18g40100
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g40100
ParalogEvidenceComments
Glyma07g16130 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g40100 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g184000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g40100
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g40100
>Glyma18g40100.1   sequence type=CDS   gene model=Glyma18g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCATCCATGACGACTATGCTTCAGACCATGGTTCCCAAGAATGCACCGAATCTCCCTCCTCGTGTTGGTGTTTCCAACAACACTACTAAGATCTCATTTGCTGGCTCAGGTAGGGTACCGTGCACCCGGATTCAGAGGAACAGGAATAGATCTTCTTCCATTGTGGTTGCTGCAGTTGGAGATGTTTCATCTGATGGCACCACTTACCTTGTTGCTGGTGCCATTGCTGTGGCTCTCATTGGAACAGCCTTCCCCATCTTCTTCTCCCGCAAAGACACATGCCCTGAATGTGATGGAGCAGGGTTTGTGCGTAAGGCTGATGTGACATTGAGGGCCAATGCAGCACGAAAGGATCAAACCCAAATCGTTTGTGCTCGTTGCAATGGTTTGGGCAAACTAAACCAAATTGACAAATAG
Predicted protein sequences of Glyma18g40100
>Glyma18g40100.1   sequence type=predicted peptide   gene model=Glyma18g40100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASMTTMLQTMVPKNAPNLPPRVGVSNNTTKISFAGSGRVPCTRIQRNRNRSSSIVVAAVGDVSSDGTTYLVAGAIAVALIGTAFPIFFSRKDTCPECDGAGFVRKADVTLRANAARKDQTQIVCARCNGLGKLNQIDK*






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