Glyma18g40060 - SoyBase

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Report for Sequence Feature Glyma18g40060

Feature Type:	gene_model
Chromosome:	Gm18
Start:	48544536
stop:	48548329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g40060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C6T0P6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T0P6_SOYBN	SoyBase	E_val: 1.00E-165	ISS
UniRef100_E4MX01	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-13-G07 n=1 Tax=Eutrema halophilum RepID=E4MX01_THEHA	SoyBase	E_val: 1.00E-11	ISS

Expression Patterns of Glyma18g40060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g40060

Paralog	Evidence	Comments
Glyma07g16070	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g40060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g183600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g40060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g40060

Limit To All Plant Sequences

>Glyma18g40060.4   sequence type=transcript   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTATTACCTATGGTAAACTGATTTTGAGTCAGTTAGTTAACTTCTTTATGCACGCGCCATGGGTATATGGGCAGTGACAAGAAGGAGACAATGGAGGGTGTGGATGTCATATTCTCCGATATACTCAGCATGGCATCCTTAAAGTGAACTTCTTTTAAGAGTCTTTGGTTTTCCAGATCCAGATGGAGGAAAGCAGGAACAACCCTTCTCAAGTTGACAGCTTCCAGGTGGATGAAATGCACAATCTTAGCATTGTTGAATGGAAAAAGAAAAGAAAATTACAGACTGATCAGTTGGATTTGCTTAGACCTAAACATAGATGCTGGGTTGGAAGTTTCTCCTCTGCACATGCTTCAGTGTTTGATGAGAATCCAGTTTTAGAGAGCATGCATAACCACACAGTTGAAAGCTCGGAACCTGAATCTGCCAAAGACAGCAATAGTCTTATGGAAGACTGTGATACTGCCATTTCTGTAAATGAAGAATCCAAGCATGAGGCAGATTGCGGAAATTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCTTTTGTTGATAGCGAATGCATTCCACCTTATGATGATGCCAATGCACAAGCTTTGATCAATCATGAGGAACACCTTCAGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTAAAGACAGCAATGAGTACCCTGTCGAGAAGGAATTCGAAGATTTTCTTTACTCCAGTGGGGCGAATTCTAATGTGTATGTCCTTTCATCTGGAAGATGGAATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAGGACAGTTAACCTATAAAGGAGTATGTATAATGGTATATGTAATGCTGAAAACGGCTGTTATATGTATTGTACGAAGATTTAGTAGTATTCTGATGACTTTATAACATCTTCTTCGGTAAGTGTAATATGACATTTCTTCTTATGGCCTTTCTTCTCTTTATCTCTCACTCTTCAATTCCTAATGCATTACATTCTTCAGTGATGCCGCAGTTCTGAAATTATCTTCTATATTGCACCTTTGTATTTTTCATTTTGACTTCATATT

>Glyma18g40060.5   sequence type=transcript   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATTTTATTACCTATGGTAAACTGATTTTGAGTCAGTTAGTTAACTTCTTTATGCACGCGCCATGGGTATATGGGCAGTGACAAGAAGGAGACAATGGAGGGTGTGGATGTCATATTCTCCGATATACTCAGCATGGCATCCTTAAAGTGAACTTCTTTTAAGAGATCCAGATGGAGGAAAGCAGGAACAACCCTTCTCAAGTTGACAGCTTCCAGGTGGATGAAATGCACAATCTTAGCATTGTTGAATGGAAAAAGAAAAGAAAATTACAGACTGATCAGTTGGATTTGCTTAGACCTAAACATAGATGCTGGGTTGGAAGTTTCTCCTCTGCACATGCTTCAGTGTTTGATGAGAATCCAGTTTTAGAGAGCATGCATAACCACACAGTTGAAAGCTCGGAACCTGAATCTGCCAAAGACAGCAATAGTCTTATGGAAGACTGTGATACTGCCATTTCTGTAAATGAAGAATCCAAGCATGAGGCAGATTGCGGAAATTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCTTTTGTTGATAGCGAATGCATTCCACCTTATGATGATGCCAATGCACAAGCTTTGATCAATCATGAGGAACACCTTCAGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTAAAGACAGCAATGAGTACCCTGTCGAGAAGGAATTCGAAGATTTTCTTTACTCCAGTGGGGCGAATTCTAATGTGTATGTCCTTTCATCTGGAAGATGGAATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAGGACAGTTAACCTATAAAGGAGTATGTATAATGGTATATGTAATGCTGAAAACGGCTGTTATATGTATTGTACGAAGATTTAGTAGTATTCTGATGACTTTATAACATCTTCTTCGGTAAGTGTAATATGACATTTCTTCTTATGGCCTTTCTTCTCTTTATCTCTCACTCTTCAATTCCTAATGCATTACATTCTTCAGTGATGCCGCAGTTCTGAAATTATCTTCTATATTGCACCTTTGTATTTTTCATTTTGACTTCATATT

Coding sequences of Glyma18g40060

Limit To All Plant Sequences

>Glyma18g40060.3   sequence type=CDS   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCAGGAACAACCCTTCTCAAGTTGACAGCTTCCAGGTGGATGAAATGCACAATCTTAGCATTGTTGAATGGAAAAAGAAAAGAAAATTACAGACTGATCAGTTGGATTTGCTTAGACCTAAACATAGATGCTGGGTTGGAAGTTTCTCCTCTGCACATGCTTCAGTGTTTGATGAGAATCCAGTTTTAGAGAGCATGCATAACCACACAGTTGAAAGCTCGGAACCTGAATCTGCCAAAGACAGCAATAGTCTTATGGAAGACTGTGATACTGCCATTTCTGTAAATGAAGAATCCAAGCATGAGGCAGATTGCGGAAATTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCTTTTGTTGATAGCGAATGCATTCCACCTTATGATGATGCCAATGCACAAGCTTTGATCAATCATGAGGAACACCTTCAGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTAAAGACAGCAATGAGTACCCTGTCGAGAAGGAATTCGAAGATTTTCTTTACTCCAGTGGGGCGAATTCTAATGTGTATGTCCTTTCATCTGGAAGATGGAATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAG

>Glyma18g40060.4   sequence type=CDS   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCAGGAACAACCCTTCTCAAGTTGACAGCTTCCAGGTGGATGAAATGCACAATCTTAGCATTGTTGAATGGAAAAAGAAAAGAAAATTACAGACTGATCAGTTGGATTTGCTTAGACCTAAACATAGATGCTGGGTTGGAAGTTTCTCCTCTGCACATGCTTCAGTGTTTGATGAGAATCCAGTTTTAGAGAGCATGCATAACCACACAGTTGAAAGCTCGGAACCTGAATCTGCCAAAGACAGCAATAGTCTTATGGAAGACTGTGATACTGCCATTTCTGTAAATGAAGAATCCAAGCATGAGGCAGATTGCGGAAATTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCTTTTGTTGATAGCGAATGCATTCCACCTTATGATGATGCCAATGCACAAGCTTTGATCAATCATGAGGAACACCTTCAGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTAAAGACAGCAATGAGTACCCTGTCGAGAAGGAATTCGAAGATTTTCTTTACTCCAGTGGGGCGAATTCTAATGTGTATGTCCTTTCATCTGGAAGATGGAATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAG

>Glyma18g40060.5   sequence type=CDS   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCAGGAACAACCCTTCTCAAGTTGACAGCTTCCAGGTGGATGAAATGCACAATCTTAGCATTGTTGAATGGAAAAAGAAAAGAAAATTACAGACTGATCAGTTGGATTTGCTTAGACCTAAACATAGATGCTGGGTTGGAAGTTTCTCCTCTGCACATGCTTCAGTGTTTGATGAGAATCCAGTTTTAGAGAGCATGCATAACCACACAGTTGAAAGCTCGGAACCTGAATCTGCCAAAGACAGCAATAGTCTTATGGAAGACTGTGATACTGCCATTTCTGTAAATGAAGAATCCAAGCATGAGGCAGATTGCGGAAATTCATACTTATATGTAAATAGGGTAAGCTATATCGATGAGGAAGCTTTTGTTGATAGCGAATGCATTCCACCTTATGATGATGCCAATGCACAAGCTTTGATCAATCATGAGGAACACCTTCAGGGGTTAGGAAGCTTTTCAGGTCATGAATGCTCAGAAGATGCTAAAGACAGCAATGAGTACCCTGTCGAGAAGGAATTCGAAGATTTTCTTTACTCCAGTGGGGCGAATTCTAATGTGTATGTCCTTTCATCTGGAAGATGGAATGTAAATCAAGAAGCTCAATCAAGCTCAAGACCACCAACAATTGATCAAGAGTTTGAGGAGTACTTTTCTATGCTTATGCTCTAG

Predicted protein sequences of Glyma18g40060

Limit To All Plant Sequences

>Glyma18g40060.3   sequence type=predicted peptide   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESRNNPSQVDSFQVDEMHNLSIVEWKKKRKLQTDQLDLLRPKHRCWVGSFSSAHASVFDENPVLESMHNHTVESSEPESAKDSNSLMEDCDTAISVNEESKHEADCGNSYLYVNRVSYIDEEAFVDSECIPPYDDANAQALINHEEHLQGLGSFSGHECSEDAKDSNEYPVEKEFEDFLYSSGANSNVYVLSSGRWNVNQEAQSSSRPPTIDQEFEEYFSMLML*

>Glyma18g40060.4   sequence type=predicted peptide   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESRNNPSQVDSFQVDEMHNLSIVEWKKKRKLQTDQLDLLRPKHRCWVGSFSSAHASVFDENPVLESMHNHTVESSEPESAKDSNSLMEDCDTAISVNEESKHEADCGNSYLYVNRVSYIDEEAFVDSECIPPYDDANAQALINHEEHLQGLGSFSGHECSEDAKDSNEYPVEKEFEDFLYSSGANSNVYVLSSGRWNVNQEAQSSSRPPTIDQEFEEYFSMLML*

>Glyma18g40060.5   sequence type=predicted peptide   gene model=Glyma18g40060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESRNNPSQVDSFQVDEMHNLSIVEWKKKRKLQTDQLDLLRPKHRCWVGSFSSAHASVFDENPVLESMHNHTVESSEPESAKDSNSLMEDCDTAISVNEESKHEADCGNSYLYVNRVSYIDEEAFVDSECIPPYDDANAQALINHEEHLQGLGSFSGHECSEDAKDSNEYPVEKEFEDFLYSSGANSNVYVLSSGRWNVNQEAQSSSRPPTIDQEFEEYFSMLML*

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