Glyma18g39970 - SoyBase

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Report for Sequence Feature Glyma18g39970

Feature Type:	gene_model
Chromosome:	Gm18
Start:	48400098
stop:	48404024
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g39970

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43290	AT	Annotation by Michelle Graham. TAIR10: WRKY DNA-binding protein 49 \| chr5:17371987-17373083 REVERSE LENGTH=274	SoyBase	E_val: 9.00E-51	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
PF03106	PFAM	WRKY DNA -binding domain	JGI		ISS
UniRef100_G1ESZ7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WRKY32 n=1 Tax=(Populus tomentosa x P. bolleana) x P. tomentosa RepID=G1ESZ7_9ROSI	SoyBase	E_val: 9.00E-87	ISS
UniRef100_UPI000233E273	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E273 related cluster n=1 Tax=unknown RepID=UPI000233E273	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma18g39970

Locus	Gene Symbol	Protein Name
	WRKY170	WRKY Transcription Factor

Expression Patterns of Glyma18g39970

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g39970

Paralog	Evidence	Comments
Glyma07g16040	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g39970 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g183100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g39970

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g39970

Limit To All Plant Sequences

>Glyma18g39970.2   sequence type=CDS   gene model=Glyma18g39970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTGAGTTAGCCATGTCAAAGACAATGATGGAGGAAGTAGTAATGACAACTTCTTGGTCAGAGGGTTCAGAGGATGATGACCTTGTGAGAGAGCTTTTGGATGATGGGTCTCCCCTTCTTATTGAACCCCCCAACACAACAACAAAAGCCTCTTCAAGTGATGACCAAGACCAAGCCTTTAATAAGTTCATCTCCAACATTTACTCAGGACCTACCATTTCAGATATTGAAAATGCTTTGTCAGTGACCAACCAAAGAGACCATTTCCCACAACTCTCATCGGCCAGAGTTTCCATATTGGAAAGGGGTTTGAGTAAGATTGAGAATAAGTATACCCTGAAAATCAAATGCTTTGGCAACGTGATGGGTGATGATGGATATAAGTGGAGAAAGTATGGACAGAAATCAATTAAGAATAGCCCAAATCCTAGGAGTTATTATAGGTGCACCAATCCAAGGTGCAGTGCCAAGAAGCAAGTAGAGAGATCCAATGAGGACCCAGACACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCGTATTTTCTCATGGGCCAACTTCAGCAATCTAATTCCCACCCACCAATCAAGAAGTCCAAGCCCATCTCTCCACAGGCTCAGGCCCAAGCCCATAGAGAAGACTATGTTCAGGAAGCCCAATCAAATGCTACTTGGGGCATGATGTCATCCACTTCATTGGACTCTACACTAGACATGGCCCAAGAAAATTTGGGCTCACAAGGGTTGCTTGAAGATATGGTGCCATTCATGGTTCGGAACCCGTCAAACAATGTCAATAGTGCTCACACAAAATTTTCTTGTTCTTCGTACAGTTCTCCTCCAACATCTCCTCTTTGGACTTCAACTTACTCCACCACTTGCTATACCGTTGGCTTAAATTCTAGCACTTAA

Predicted protein sequences of Glyma18g39970

Limit To All Plant Sequences

>Glyma18g39970.2   sequence type=predicted peptide   gene model=Glyma18g39970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVELAMSKTMMEEVVMTTSWSEGSEDDDLVRELLDDGSPLLIEPPNTTTKASSSDDQDQAFNKFISNIYSGPTISDIENALSVTNQRDHFPQLSSARVSILERGLSKIENKYTLKIKCFGNVMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPDTLIITYEGLHLHFAYPYFLMGQLQQSNSHPPIKKSKPISPQAQAQAHREDYVQEAQSNATWGMMSSTSLDSTLDMAQENLGSQGLLEDMVPFMVRNPSNNVNSAHTKFSCSSYSSPPTSPLWTSTYSTTCYTVGLNSST*

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