Report for Sequence Feature Glyma18g39960
Feature Type: gene_model
Chromosome: Gm18
Start: 48315715
stop: 48319166
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g39960
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G02230 AT
Annotation by Michelle Graham. TAIR10: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein | chr5:449132-450507 FORWARD LENGTH=280
SoyBase E_val: 3.00E-135 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0003824 GO-mf
Annotation by Michelle Graham. GO Molecular Function: catalytic activity
SoyBase N/A ISS
GO:0016787 GO-mf
Annotation by Michelle Graham. GO Molecular Function: hydrolase activity
SoyBase N/A ISS
KOG3109
KOG
Haloacid dehalogenase-like hydrolase
JGI ISS
PTHR18901 Panther
2-DEOXYGLUCOSE-6-PHOSPHATE PHOSPHATASE 2
JGI ISS
UniRef100_B6TKR3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Catalytic/ hydrolase n=2 Tax=Zea mays RepID=B6TKR3_MAIZE
SoyBase E_val: 6.00E-133 ISS
UniRef100_UPI000233EFA4 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI000233EFA4 related cluster n=1 Tax=unknown RepID=UPI000233EFA4
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g39960
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g39960
Paralog Evidence Comments
Glyma07g16020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g39960 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g182800 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g39960
Coding sequences of Glyma18g39960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g39960.1 sequence type=CDS gene model=Glyma18g39960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAGTACATGAACCAGAGACCAAAATATGATTGCCTTCTTTTTGATTTAGATGATACTTTGTATCCACTAAGCACTGGTCTTGCAAAAGCATGTGGCCAAAATATTAAAGACTATATGGTGGAAAAGCTTGGCATAGACAAAAGCAAAATTGATGACTTGTCCAACCTCCTCTACAAGAACTATGGAACAACTATGGCTGGTTTAAGGGCAATTGGATATGACTTTGAATATGATGAATATCACAGTTATGTTCATGGGAGATTACCTTATGAGAATTTGAAACCAGACCCAGTTCTGAGGAACCTTTTGCTGAGCCTGCCCTATAGGAAACTGATTTTCACAAACTCAGACAAAGTCCATGCTGTTAAGGCACTAAGCAAGCTTGGATTAGAAGACTGCTTTGAAGGAATCATATGCTTTGAGACCCTTAATCCCATCCACAAAAGTTCTGTCTCTGATGATGAAGACGACATTGAGTTTGTGGGGGGTTCAGGCACAACAATTCCAGCACCAAAAAAAGATGTTAATAGCTTTCAAATCTTTGACCTCATTAGCCATTTTGCTAAGCCCAATCCCAACACAGTTTTGCCAAAGACACCAATTATTTGCAAACCATCAGAAAATGCCATTGAGTTGGCTCTCAAGATAGCCAACCTTAATCCACAGAGAACTTTGTTCTTTGAGGATAGTGTCCGCAACATACAAGCTGGAAAACGTGTGGGTCTTCACACTGTGCTGGTTGGAAAATCTCAGAGAATTAAAGGAGCAGATTATGCATTAGAAAGCATCCACAACCTTAGGGAGGCAGTACCAGAACTATGGGAGGGTGACATAAAATCAGAAGTTGCTTATCCTGGCAAGCATTCTGTGGAGACATCTGTGACTGCTTAG
Predicted protein sequences of Glyma18g39960
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g39960.1 sequence type=predicted peptide gene model=Glyma18g39960 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEYMNQRPKYDCLLFDLDDTLYPLSTGLAKACGQNIKDYMVEKLGIDKSKIDDLSNLLYKNYGTTMAGLRAIGYDFEYDEYHSYVHGRLPYENLKPDPVLRNLLLSLPYRKLIFTNSDKVHAVKALSKLGLEDCFEGIICFETLNPIHKSSVSDDEDDIEFVGGSGTTIPAPKKDVNSFQIFDLISHFAKPNPNTVLPKTPIICKPSENAIELALKIANLNPQRTLFFEDSVRNIQAGKRVGLHTVLVGKSQRIKGADYALESIHNLREAVPELWEGDIKSEVAYPGKHSVETSVTA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
