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Report for Sequence Feature Glyma18g39933

Feature Type:gene_model
Chromosome:Gm18
Start:48272289
stop:48278555
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g39933
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37660AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr2:15795481-15796977 REVERSE LENGTH=325 SoyBaseE_val: 8.00E-156ISS
GO:0000272GO-bp Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process SoyBaseN/AISS
GO:0005982GO-bp Annotation by Michelle Graham. GO Biological Process: starch metabolic process SoyBaseN/AISS
GO:0006364GO-bp Annotation by Michelle Graham. GO Biological Process: rRNA processing SoyBaseN/AISS
GO:0006694GO-bp Annotation by Michelle Graham. GO Biological Process: steroid biosynthetic process SoyBaseN/AISS
GO:0009409GO-bp Annotation by Michelle Graham. GO Biological Process: response to cold SoyBaseN/AISS
GO:0009664GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization SoyBaseN/AISS
GO:0009697GO-bp Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process SoyBaseN/AISS
GO:0009814GO-bp Annotation by Michelle Graham. GO Biological Process: defense response, incompatible interaction SoyBaseN/AISS
GO:0015995GO-bp Annotation by Michelle Graham. GO Biological Process: chlorophyll biosynthetic process SoyBaseN/AISS
GO:0019288GO-bp Annotation by Michelle Graham. GO Biological Process: isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway SoyBaseN/AISS
GO:0019684GO-bp Annotation by Michelle Graham. GO Biological Process: photosynthesis, light reaction SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0009570GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma SoyBaseN/AISS
GO:0009579GO-cc Annotation by Michelle Graham. GO Cellular Compartment: thylakoid SoyBaseN/AISS
GO:0048046GO-cc Annotation by Michelle Graham. GO Cellular Compartment: apoplast SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003854GO-mf Annotation by Michelle Graham. GO Molecular Function: 3-beta-hydroxy-delta5-steroid dehydrogenase activity SoyBaseN/AISS
GO:0005507GO-mf Annotation by Michelle Graham. GO Molecular Function: copper ion binding SoyBaseN/AISS
GO:0016616GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor SoyBaseN/AISS
PTHR14194Panther NITROGEN METABOLIC REGULATION PROTEIN NMR-RELATED JGI ISS
PTHR14194:SF17Panther SUBFAMILY NOT NAMED JGI ISS
PF01073PFAM 3-beta hydroxysteroid dehydrogenase/isomerase family JGI ISS
UniRef100_B6T962UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAD-dependent epimerase/dehydratase n=1 Tax=Zea mays RepID=B6T962_MAIZE SoyBaseE_val: 3.00E-152ISS
UniRef100_I1N2I4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2I4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g39933
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g39933 not represented in the dataset
Glyma18g39933 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g39933
ParalogEvidenceComments
Glyma07g15960 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g39933 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g182600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g39933
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g39933
>Glyma18g39933.1   sequence type=CDS   gene model=Glyma18g39933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGAGTCTGAGAAGAGTACTGTGCTTGTTACGGGAGCCGGTGGTCGCACAGGACAAATAGTTTACAAAAAATTAAAAGAGAGGCCAAACCAATATGTGGCTAGAGGTCTGGTTAGAACAGATGAAAGCAAACAGAACATTGGTGCTGCAGATGACGTTTTTGTTGGGGATATAAGACATGCTGAAAGTATTGTTCCTGCAATTCAAGGTATAGATGCTCTCATAATCCTCACAAGTGCTGTTCCACAGATAAAACCTGGGTTTGATCCTACCAAAGGACAAAGACCAGAGTTCTATTTTGATGATGGTGCATATCCTGAGCAGGTTGACTGGATTGGGCAGAAAAATCAAATAGATGCCGCTAAGGCTGCTGGAGTGAAGCACATTGTGTTAGTAGGGTCTATGGGTGGAACAGATCTTAACCATCCTTTGAACAGCTTGGGTAATGGGAATATACTGGTTTGGAAAAGGAAGGCTGAGCAATATCTGGCTGATTCCGGCATCCCATATACAATTATAAGGGCTGGTGGCTTGCAAGACAAAGATGGAGGTCTTCGGGAACTACTTGTAGGGAAGGATGATGAGCTTCTCCAGACTGAAACCAGAACCATAACTAGATCTGATGTTGCAGAAGTCTGCATTCAGGCACTAAATTATGAGGAGGCTAAATTCAAGGCATTTGACTTGGCGTCAAAACCAGAGGGAGCTGGTTCAGCAACAAAGGACTTGAAGGCTTTATTTTCCCAGATCACCACTCGCTTTTGA
Predicted protein sequences of Glyma18g39933
>Glyma18g39933.1   sequence type=predicted peptide   gene model=Glyma18g39933   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAESEKSTVLVTGAGGRTGQIVYKKLKERPNQYVARGLVRTDESKQNIGAADDVFVGDIRHAESIVPAIQGIDALIILTSAVPQIKPGFDPTKGQRPEFYFDDGAYPEQVDWIGQKNQIDAAKAAGVKHIVLVGSMGGTDLNHPLNSLGNGNILVWKRKAEQYLADSGIPYTIIRAGGLQDKDGGLRELLVGKDDELLQTETRTITRSDVAEVCIQALNYEEAKFKAFDLASKPEGAGSATKDLKALFSQITTRF*






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