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Report for Sequence Feature Glyma18g39911
Feature Type: gene_model
Chromosome: Gm18
Start: 48205187
stop: 48211401
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g39911
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G46590 AT
Annotation by Michelle Graham. TAIR10: TRF-like 1 | chr3:17153642-17155946 FORWARD LENGTH=552
SoyBase E_val: 7.00E-105 ISS
GO:0009723 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus
SoyBase N/A ISS
GO:0009737 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus
SoyBase N/A ISS
GO:0009739 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus
SoyBase N/A ISS
GO:0009751 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus
SoyBase N/A ISS
GO:0009753 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0008301 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding, bending
SoyBase N/A ISS
GO:0042162 GO-mf
Annotation by Michelle Graham. GO Molecular Function: telomeric DNA binding
SoyBase N/A ISS
PTHR14014 Panther
TELOMERIC REPEAT BINDING PROTEIN
JGI ISS
UniRef100_D9ZJ81 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: MYBR domain class transcription factor n=1 Tax=Malus x domestica RepID=D9ZJ81_MALDO
SoyBase E_val: 8.00E-138 ISS
UniRef100_I1N2I1 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2I1_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g39911
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma18g39911
Paralog Evidence Comments
Glyma07g15940 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g39911 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g182400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g39911
Transcripts of Glyma18g39911
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g39911.2 sequence type=transcript gene model=Glyma18g39911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CGAACAAGGAGTGGCTCGTGGTTTTGAAACTCGTTCAATCATTTTTGTTTGTTGTTTTAGTATGTGAATGAGAAAAGATGGAACCCAAATGAGTGGAGAGTCTTCCACGTGGGAAGCAAAGAAGTGACATGGAGAGAGGAGTGAGTGGATCACCCCAAACGAAGGAACCAGTCGCATCCAAGTGGTTTTTGCTGACACAACCTGCTGTAGCCGGTCATTTGACACCATGTTATCGGCTAGTCCCTTCCTAGGATATTGAGTGGTCAAACGTTTGCAAACAGTTAGTCGGGGTTGTGAGGGGTTTAAGAACAAACACAGGCTTGGGGTAGTTTTCAGGAGGATTTTGTTTTATCAGACAATAGCCCAAGTCTCTGGGTGAGAATTTTTTGATTGCCTTTCATCAACAAATTTCTTGCAGACAACCAAAAATAAGTGTTCATTTTTTTGGTGCAAACATAATTCAACACAAGAAGAAAGGGGGGTATTTGTCGGCTTGATTTTCAAACCAGAAGAGAGTGGCCTCAACATAGGTTGAAGGGTTCTTCTAATGCCCACTTACCTGTTCTAATCTTAGGTGTTTGCAAACCTCAAGGAAGTCGATTAGATTCTATCTAATGACTTTTTCTTATAGGAGTGATTATCTGAGATATGGTGTTGCAGAAGAGGTTGAACTATGGTTTTAATGGCTATCAGGTGCCTGTCATTCCTAGAGCTTCAAGGTCAGCTAGGGGGAGGGGCACAATCAGGAAGAAACCTGACAGCAGCCAGATACAGGCTTTTGAAATCTTGGCTAGTGTAGCTGGAAACTTTTTGCAGGAGAATGAGAGTTCCAATCCTGAAAATGTTGTGCTTGCAAAAGATCCTCGCACTTTGTCTGGTACTAACATAAAGGACAAACATGGGGATGAAAGGTCATTTAAGGGGGCCCTGTTTGAGCATGGAGCTTGCAGTGAAATTGCCTCTGTCTTTGTCCCTAGTATGCAAGGGAAACATGACAACCATAGAGTCATGGGGGATTCATCTTTTCTTGACAATCATCTTGAAGGCCAAGGACAAAATGTCCCTGAGAGGGAAGATGAAAGGATCAAAGGGAGAAGTGTAAATGGGAAAACCATCCACATTAAAGGCTGCTCTAATGGGTTAATAGAACCAGGTCACGGAGTATCTAAACATTGTAGTTCTGCTAATAATGTGGAAAAGCCATCGTTGGAGGGCCGCAAGCCTCTTGATTCTTTTCCCAAATGTTTCACTTCTAGGAAATTAGTTAATAGAGATGATGATGAAACATTAGATAGGTGCACACAACTGAACTCCAAGAATAATACATCTGGCGCACCACCAGATACGCCAAAATTGAAGGATGCAAGTCCTTTTATAAGTGATGAGAACAATAGTAGGGACATTTCTGAGCTTGAAAGTTTACAAAGGATGTATCCATTTAAGAAGAGGAAATTCTTCAATCAGACCTCATCTTCTGCATCTGATAGGGGGTCTCAATGTCAAGGCATGTTTGATTCTTCTGACACCATCAGGGTTAATGGCACAAACCATGCAATTGAGGAATCATCCTCTATAGTTGGTCAACAAGCACATTTTGGGTCCAGGGGTTGTAATGTGAAGCTCAGCATAAAATCCTTTAAAGTCCCAGAGCTTTTTATTGATATACCTGAAACTGCAACTATTGGTTCACTGAAAAGAACAGTAATGGAGGCTGTGACAGCTATACTTGGAGATGAATTACATGTGGGCATCCTTCTTCAGGGAAAGAAAGTCCGAGATGATAGCAAAACTCTGATCCAAACTGGGATATCTCAAGATGACAAACGTCATAGATTGGGATTTATGTTGGAGCCAAGACATACTCAATCTCCATCTTCATACAATGATGACCCTTGTTATCCAACCACTAGTTCGCGACAAAAATTATCCAGGCAATCAACATCTGTAACGTTACAACAAGGAACATATAATGTATCCAAAGAACGTTCTATGATCAAAATTGAAAGTTATGCTGAGGGTGATCTTAATATGGTCACCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGGGCTCTGGTGGCAGTTCCTGCCATTAACATGGAAACATTAGCTGTGGTTCCATTCCGGCGCAAATCTGAGAATCCTGACTTTGCACAGCGCCGAATCAGAAGGCCATTCTCTGTTCTAGAAGTAGAAGCATTGGTTCAGGCTGTTGAAAAACTTGGAACTGGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAGCATCGAACTTATGTGGATTTGAAGGATAAGTGGAAAACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGGGGAGAACCTGTTCCTCAGGAGCTTCTGGATAGGGTCTTAGCTGCTCATGCCTATTGGTCTCAACAACAGTGTAAGCATCAACTTAAACCACTGTGAACCATTTCAACTATTGATGAACACAGAAGAACAAGTACATTGTTGCAGAAGTACGATTTCCAAAGTGAAGTAGTGCAGTTATGATAAAAGTTGATAGTATAAAACGTTTACATAATATACTCATGTGATTCCATAATTTATCCTCCCTAAGCCTGATAATGGTTTGGTTGTCTGTACATGATTGTTTTGGCCTAAAAGGAATATGGTGTCACTCATACCATCCCTTGTGGTCGATTGCTAGCATGCTATCAATATGCAAATTAGAATAATGAATAATGTATAGTAGTTAAACCTCTTAGAAATTGTTTCTTGGTTATCTTCATTGTTGCAAGCCATTACAATGACATAAAGGAATACATATATGAACAGATAAAAATCTTATGCAAATAGATGTATAGCTTCTCGATTACAGTT
Coding sequences of Glyma18g39911
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g39911.1 sequence type=CDS gene model=Glyma18g39911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTTGCAGAAGAGGTTGAACTATGGTTTTAATGGCTATCAGGTGCCTGTCATTCCTAGAGCTTCAAGGTCAGCTAGGGGGAGGGGCACAATCAGGAAGAAACCTGACAGCAGCCAGATACAGGCTTTTGAAATCTTGGCTAGTGTAGCTGGAAACTTTTTGCAGGAGAATGAGAGTTCCAATCCTGAAAATGTTGTGCTTGCAAAAGATCCTCGCACTTTGTCTGGTACTAACATAAAGGACAAACATGGGGATGAAAGGTCATTTAAGGGGGCCCTGTTTGAGCATGGAGCTTGCAGTGAAATTGCCTCTGTCTTTGTCCCTAGTATGCAAGGGAAACATGACAACCATAGAGTCATGGGGGATTCATCTTTTCTTGACAATCATCTTGAAGGCCAAGGACAAAATGTCCCTGAGAGGGAAGATGAAAGGATCAAAGGGAGAAGTGTAAATGGGAAAACCATCCACATTAAAGGCTGCTCTAATGGGTTAATAGAACCAGGTCACGGAGTATCTAAACATTGTAGTTCTGCTAATAATGTGGAAAAGCCATCGTTGGAGGGCCGCAAGCCTCTTGATTCTTTTCCCAAATGTTTCACTTCTAGGAAATTAGTTAATAGAGATGATGATGAAACATTAGATAGGTGCACACAACTGAACTCCAAGAATAATACATCTGGCGCACCACCAGATACGCCAAAATTGAAGGATGCAAGTCCTTTTATAAGTGATGAGAACAATAGTAGGGACATTTCTGAGCTTGAAAGTTTACAAAGGATGTATCCATTTAAGAAGAGGAAATTCTTCAATCAGACCTCATCTTCTGCATCTGATAGGGGGTCTCAATGTCAAGGCATGTTTGATTCTTCTGACACCATCAGGGTTAATGGCACAAACCATGCAATTGAGGAATCATCCTCTATAGTTGGTCAACAAGCACATTTTGGGTCCAGGGGTTGTAATGTGAAGCTCAGCATAAAATCCTTTAAAGTCCCAGAGCTTTTTATTGATATACCTGAAACTGCAACTATTGGTTCACTGAAAAGAACAGTAATGGAGGCTGTGACAGCTATACTTGGAGATGAATTACATGTGGGCATCCTTCTTCAGGGAAAGAAAGTCCGAGATGATAGCAAAACTCTGATCCAAACTGGGATATCTCAAGATGACAAACGTCATAGATTGGGATTTATGTTGGAGCCAAGACATACTCAATCTCCATCTTCATACAATGATGACCCTTGTTATCCAACCACTAGTTCGCGACAAAAATTATCCAGGCAATCAACATCTGTAACGTTACAACAAGGAACATATAATGTATCCAAAGAACGTTCTATGATCAAAATTGAAAGTTATGCTGAGGGTGATCTTAATATGGTCACCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGGGCTCTGGTGGCAGTTCCTGCCATTAACATGGAAACATTAGCTGTGGTTCCATTCCGGCGCAAATCTGAGAATCCTGACTTTGCACAGCGCCGAATCAGAAGGCCATTCTCTGTTCTAGAAGTAGAAGCATTGGTTCAGGCTGTTGAAAAACTTGGAACTGGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAGCATCGAACTTATGTGGATTTGAAGGATAAGTGGAAAACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGGGGAGAACCTGTTCCTCAGGAGCTTCTGGATAGGGTCTTAGCTGCTCATGCCTATTGGTCTCAACAACAGTGTAAGCATCAACTTAAACCACTGTGA
>Glyma18g39911.2 sequence type=CDS gene model=Glyma18g39911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTTGCAGAAGAGGTTGAACTATGGTTTTAATGGCTATCAGGTGCCTGTCATTCCTAGAGCTTCAAGGTCAGCTAGGGGGAGGGGCACAATCAGGAAGAAACCTGACAGCAGCCAGATACAGGCTTTTGAAATCTTGGCTAGTGTAGCTGGAAACTTTTTGCAGGAGAATGAGAGTTCCAATCCTGAAAATGTTGTGCTTGCAAAAGATCCTCGCACTTTGTCTGGTACTAACATAAAGGACAAACATGGGGATGAAAGGTCATTTAAGGGGGCCCTGTTTGAGCATGGAGCTTGCAGTGAAATTGCCTCTGTCTTTGTCCCTAGTATGCAAGGGAAACATGACAACCATAGAGTCATGGGGGATTCATCTTTTCTTGACAATCATCTTGAAGGCCAAGGACAAAATGTCCCTGAGAGGGAAGATGAAAGGATCAAAGGGAGAAGTGTAAATGGGAAAACCATCCACATTAAAGGCTGCTCTAATGGGTTAATAGAACCAGGTCACGGAGTATCTAAACATTGTAGTTCTGCTAATAATGTGGAAAAGCCATCGTTGGAGGGCCGCAAGCCTCTTGATTCTTTTCCCAAATGTTTCACTTCTAGGAAATTAGTTAATAGAGATGATGATGAAACATTAGATAGGTGCACACAACTGAACTCCAAGAATAATACATCTGGCGCACCACCAGATACGCCAAAATTGAAGGATGCAAGTCCTTTTATAAGTGATGAGAACAATAGTAGGGACATTTCTGAGCTTGAAAGTTTACAAAGGATGTATCCATTTAAGAAGAGGAAATTCTTCAATCAGACCTCATCTTCTGCATCTGATAGGGGGTCTCAATGTCAAGGCATGTTTGATTCTTCTGACACCATCAGGGTTAATGGCACAAACCATGCAATTGAGGAATCATCCTCTATAGTTGGTCAACAAGCACATTTTGGGTCCAGGGGTTGTAATGTGAAGCTCAGCATAAAATCCTTTAAAGTCCCAGAGCTTTTTATTGATATACCTGAAACTGCAACTATTGGTTCACTGAAAAGAACAGTAATGGAGGCTGTGACAGCTATACTTGGAGATGAATTACATGTGGGCATCCTTCTTCAGGGAAAGAAAGTCCGAGATGATAGCAAAACTCTGATCCAAACTGGGATATCTCAAGATGACAAACGTCATAGATTGGGATTTATGTTGGAGCCAAGACATACTCAATCTCCATCTTCATACAATGATGACCCTTGTTATCCAACCACTAGTTCGCGACAAAAATTATCCAGGCAATCAACATCTGTAACGTTACAACAAGGAACATATAATGTATCCAAAGAACGTTCTATGATCAAAATTGAAAGTTATGCTGAGGGTGATCTTAATATGGTCACCTCTCTAGCAGATACTTCAGCTAACAATAACATGTCAAAGTGTCGGGCTCTGGTGGCAGTTCCTGCCATTAACATGGAAACATTAGCTGTGGTTCCATTCCGGCGCAAATCTGAGAATCCTGACTTTGCACAGCGCCGAATCAGAAGGCCATTCTCTGTTCTAGAAGTAGAAGCATTGGTTCAGGCTGTTGAAAAACTTGGAACTGGAAGGTGGCGTGATGTCAAACAACGTGCTTTTGACCATGCAAAGCATCGAACTTATGTGGATTTGAAGGATAAGTGGAAAACATTAGTGCACACTGCAAGAATCTCCCCTCAGCAAAGGAGGGGAGAACCTGTTCCTCAGGAGCTTCTGGATAGGGTCTTAGCTGCTCATGCCTATTGGTCTCAACAACAGTGTAAGCATCAACTTAAACCACTGTGA
Predicted protein sequences of Glyma18g39911
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g39911.1 sequence type=predicted peptide gene model=Glyma18g39911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVLQKRLNYGFNGYQVPVIPRASRSARGRGTIRKKPDSSQIQAFEILASVAGNFLQENESSNPENVVLAKDPRTLSGTNIKDKHGDERSFKGALFEHGACSEIASVFVPSMQGKHDNHRVMGDSSFLDNHLEGQGQNVPEREDERIKGRSVNGKTIHIKGCSNGLIEPGHGVSKHCSSANNVEKPSLEGRKPLDSFPKCFTSRKLVNRDDDETLDRCTQLNSKNNTSGAPPDTPKLKDASPFISDENNSRDISELESLQRMYPFKKRKFFNQTSSSASDRGSQCQGMFDSSDTIRVNGTNHAIEESSSIVGQQAHFGSRGCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTAILGDELHVGILLQGKKVRDDSKTLIQTGISQDDKRHRLGFMLEPRHTQSPSSYNDDPCYPTTSSRQKLSRQSTSVTLQQGTYNVSKERSMIKIESYAEGDLNMVTSLADTSANNNMSKCRALVAVPAINMETLAVVPFRRKSENPDFAQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDHAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQLKPL*
>Glyma18g39911.2 sequence type=predicted peptide gene model=Glyma18g39911 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVLQKRLNYGFNGYQVPVIPRASRSARGRGTIRKKPDSSQIQAFEILASVAGNFLQENESSNPENVVLAKDPRTLSGTNIKDKHGDERSFKGALFEHGACSEIASVFVPSMQGKHDNHRVMGDSSFLDNHLEGQGQNVPEREDERIKGRSVNGKTIHIKGCSNGLIEPGHGVSKHCSSANNVEKPSLEGRKPLDSFPKCFTSRKLVNRDDDETLDRCTQLNSKNNTSGAPPDTPKLKDASPFISDENNSRDISELESLQRMYPFKKRKFFNQTSSSASDRGSQCQGMFDSSDTIRVNGTNHAIEESSSIVGQQAHFGSRGCNVKLSIKSFKVPELFIDIPETATIGSLKRTVMEAVTAILGDELHVGILLQGKKVRDDSKTLIQTGISQDDKRHRLGFMLEPRHTQSPSSYNDDPCYPTTSSRQKLSRQSTSVTLQQGTYNVSKERSMIKIESYAEGDLNMVTSLADTSANNNMSKCRALVAVPAINMETLAVVPFRRKSENPDFAQRRIRRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFDHAKHRTYVDLKDKWKTLVHTARISPQQRRGEPVPQELLDRVLAAHAYWSQQQCKHQLKPL*