Glyma18g39890 - SoyBase

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Report for Sequence Feature Glyma18g39890

Feature Type:	gene_model
Chromosome:	Gm18
Start:	48185392
stop:	48194097
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g39890

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G60560	AT	Annotation by Michelle Graham. TAIR10: SWIM zinc finger family protein \| chr1:22308791-22311277 REVERSE LENGTH=703	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_I1N2H9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2H9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_O22697	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F8A5.10 protein n=1 Tax=Arabidopsis thaliana RepID=O22697_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g39890

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g39890 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g182100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g39890

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g39890

Limit To All Plant Sequences

>Glyma18g39890.3   sequence type=transcript   gene model=Glyma18g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TACGTATAATATATATTTTTAGTTTTTGGCCAAAAATATTTCCTGTGCCCCCTGAAGCGAAGCTGATCAGAACGCGCGTCGAAGCTGAGATAGTCTCCTGTGCCGTACGTCCCGCCGTTCATTGACCCCTTTGACAGTGCCGCCCCGCCGAAGTCAGCTAAACCCTAAAGGAGCAGCCCGTGCCGCGCGCGCCCCGCCGTGTCCTTCCCCGCTGTCGAAGGGTGTTCTGTTCTTTGCTTCAACATTTTTACTGTTTTGAACGTGTGATTGTTTCTGGAGAGACTTCTAGATTGTTCTGTATATATAGCAAGGAAGGTTTTTGTGTTTTTTGGTTTTTTTGCCATTTTGGATATGGCTATAGTTGAATCCGTGGGGAAGATTCCTTTGCAAGACCCACCTGAGGAGGAGTTTTGTGCTGCTGACTTGACTTGGACCAAGTTTGGTAATGCTGAGCACCATGATGAGGTTGCCCTCATTCCCTATGACAGAGTTGATGCTTTTATAATTGGTGAATGCACTAATGTGGAGTGCCCGACTCGGTTTCATATCGAGAGAGGAAGGAAACGGACTATTGGAAACTTGAAGGAGTACAAGGACGATGAGTATCTGGAGTACAGGCTGTACTGGTGCTCGTTTGGCCCTGAAAATTATGGGGAGGGAGGAGGTATATTACCTAGTCGAAGGTATCGACTTAATACTCGAAATCGTGCTGCTAGACCTCAATCAATGCGAGGTTGTACTTGTCATTTTGTTGTCAAACGTCTTTATGCTCAGCCATCACTGGCACTTATTGTATACAATGAGAGGCGTCATATTAACAAGTCTGGTTTTATCTGCCACGGACCACTTGATAGAGATGCCATTGGCCCAGGCGCCAAAAAAATTCCGTATATTTGCAATGAAATTCAGCAGCAAACTATGTCCATGATATATTTGGGCATCCCAGAAGAGAATATCTTGGAGAAACACATAGAAGGAATTCAGCGATATTGTGGTTCAGATGCAAAAGTCAGTAGCCTTGCTTCTCAGTATGTCCACAAGCTAGGGATGATTATCAAAAGGTCTACCCATGAGCTGGATCTAGATGATCAAGCTAGCATCCGCATGTGGATTGAACGCAATAGAAAGTCTGTATTTTTTCACCAGGATACTTCAGAGTCTGACCCTTTCATCTTGGGGATCCAAACAGAATGGCAGCTGCAACAAATGATTCGTTTTGGTCATCGAAGTGTTGTTGCAGCAGACTCTACGTTTGGTGTGAAGAGACTTAAATATCCCTTGTTCACACTACTTGTTTTTGATTCAAGACAACATGCACTTCCTGTCGCATGGGTCATTACACGTAGCTTTACAAAGCCTGATGTGTCTAAGTGGTTGAAAGCTTTAATTGATCGAGCTCGTAGTGTTGAGCCTGGATGGAAAGTCAGTGGATTTTTAATTGATGACGCTGCAGCTGAAATTGATCTTTTGAGAGATATATTTTGCTGTCCTGTCCTATTTTCACTATGGCGTGTTCGTAGATCATGGCTTAGGAATATTGTTAAGAAATGTAGTAATATTGAGATTCAGCGGGAGATTTTTAAGCGTCTTGGGAGAATAGTGTACAACATTTGGGGAGGTATTAATGCATCGCTTGCCTTGGAACAATTCTTGCTGGATTTTGTTGACCAAACTGCTTTCATGGAATATTTCAAAGTCATGTGGTTGCCCAAGCTTGAAATGTGGCTTTCAACGATGAGAAATTTTCCATTAGCAAGCCAGGAAGCTTCTGGAGCATTAGAAGCCTATCATGTTAAGCTGAAAGCCAAACTTTTTGATGATTCACATCTTGGAGCATTGCAAAGAGTAGATTGGTTAGTCCACAAGTTAACAACTGAGTTGCATTCAAGCTACTGGCTTGACCGGTATGCTGATGAAAGTGATTCTTTCCAGAATGTGAAGGAAAAATATATAGCTTCTACATCATGGCATCGGGCACTTCAAATTCCGGACTATGCTGTTTCCTTGGATGATAAAGACCACCTCTTTGCCAAGGTTGTGAGCCAGAAAGATAGTAGCTTAACACATATAGTGTGGAATCCAGGATCTGAATTTGCATTCTGTGATTGTTCTTGGTCAATGCAAGGTAACCTTTGCAAGCATGTTGTCAAAGTAAACATGATTTGTGAAAATCTTAAAGGTTATCAACCATCCATGTCTTTCCGGTCTTTTCAAGAGGTTTTGATGGATCTATGGAAAAAGCCAGTGGATGATTCTTTTGCGTTGGATCTGTCATTGGCTTGGACCCATCAGATGCTAGATCAAATTCAAAAACAAGTTGAACTGAATAATTCTACTGATATTGGCACTGTAGTTAACAATATGCCACTGAAATGGGTTTCTAAGAAAGGCAGAACCTACATTGGCAAACCATCATCAAGTTTGGCTCTTCCTCATGGTAGCAGTAACACAAAAAGTGTGGTTGTGTATAAGAAGAATCGGAAACGGAAAAGATTGTCTCGATTAAGATGACCAATTTGGCTGGTACCAGTAGTCATCATGTTTGATCTAGAATGTTTGGTCAATGCAAACTGGAATTCATTTCAAAATATTCTGCAACTTTTTGAATATGTGGCACTCTAGTCCTGTTGCCTCTTGTCTTTGAGGTTGCAGCATCTATTAAAAGATCAGCATATGCTCTTACGCTGATCAGAGAACAGTTATTGCTGTAATTATATGAGCATGGTTGGTAGTTGGAGATCAAATGGAGGAAGCAAAGAACTTCTTGTGCGTATGTTTTGTTCAGCCTTTATACCTGGCAATAGTTTTAGGTGATCACCTGGGAAGGGTTAGTTGTCAAATTTTCTTAGAAAGTGGAAGCCATTCCAGAACTTTTCAATTTTTATGAATTTCCCCTCACTTTCATAGTCAATAGTCATGCTAGAGTAATCATTTTTTTTTTATATTTTTTTACATTGTACCATCTTTTGAATTTGAAGTCCTTTCAAGTACTCAGTTCATTGTAGAGGATAGATCATTCCATGGATCATGTCTTTTCTTTTAGTTTTTGGCTTTGATATTCTCGTTCTTTGATTTATATGTTATGTACATATACTATTTACTGACATTATTTGGAATAAGTTGCAAGGTATTAATATACTTTAATTAGTGAGGATTTGAAACTTATTTTATTTGATAT

Coding sequences of Glyma18g39890

Limit To All Plant Sequences

>Glyma18g39890.2   sequence type=CDS   gene model=Glyma18g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAGTTGAATCCGTGGGGAAGATTCCTTTGCAAGACCCACCTGAGGAGGAGTTTTGTGCTGCTGACTTGACTTGGACCAAGTTTGGTAATGCTGAGCACCATGATGAGGTTGCCCTCATTCCCTATGACAGAGTTGATGCTTTTATAATTGGTGAATGCACTAATGTGGAGTGCCCGACTCGGTTTCATATCGAGAGAGGAAGGAAACGGACTATTGGAAACTTGAAGGAGTACAAGGACGATGAGTATCTGGAGTACAGGCTGTACTGGTGCTCGTTTGGCCCTGAAAATTATGGGGAGGGAGGAGGTATATTACCTAGTCGAAGGTATCGACTTAATACTCGAAATCGTGCTGCTAGACCTCAATCAATGCGAGGTTGTACTTGTCATTTTGTTGTCAAACGTCTTTATGCTCAGCCATCACTGGCACTTATTGTATACAATGAGAGGCGTCATATTAACAAGTCTGGTTTTATCTGCCACGGACCACTTGATAGAGATGCCATTGGCCCAGGCGCCAAAAAAATTCCGTATATTTGCAATGAAATTCAGCAGCAAACTATGTCCATGATATATTTGGGCATCCCAGAAGAGAATATCTTGGAGAAACACATAGAAGGAATTCAGCGATATTGTGGTTCAGATGCAAAAGTCAGTAGCCTTGCTTCTCAGTATGTCCACAAGCTAGGGATGATTATCAAAAGGTCTACCCATGAGCTGGATCTAGATGATCAAGCTAGCATCCGCATGTGGATTGAACGCAATAGAAAGTCTGTATTTTTTCACCAGGATACTTCAGAGTCTGACCCTTTCATCTTGGGGATCCAAACAGAATGGCAGCTGCAACAAATGATTCGTTTTGGTCATCGAAGTGTTGTTGCAGCAGACTCTACGTTTGGTGTGAAGAGACTTAAATATCCCTTGTTCACACTACTTGTTTTTGATTCAAGACAACATGCACTTCCTGTCGCATGGGTCATTACACGTAGCTTTACAAAGCCTGATGTGTCTAAGTGGTTGAAAGCTTTAATTGATCGAGCTCGTAGTGTTGAGCCTGGATGGAAAGTCAGTGGATTTTTAATTGATGACGCTGCAGCTGAAATTGATCTTTTGAGAGATATATTTTGCTGTCCTGTCCTATTTTCACTATGGCGTGTTCGTAGATCATGGCTTAGGAATATTGTTAAGAAATGTAGTAATATTGAGATTCAGCGGGAGATTTTTAAGCGTCTTGGGAGAATAGTGTACAACATTTGGGGAGGTATTAATGCATCGCTTGCCTTGGAACAATTCTTGCTGGATTTTGTTGACCAAACTGCTTTCATGGAATATTTCAAAGTCATGTGGTTGCCCAAGCTTGAAATGTGGCTTTCAACGATGAGAAATTTTCCATTAGCAAGCCAGGAAGCTTCTGGAGCATTAGAAGCCTATCATGTTAAGCTGAAAGCCAAACTTTTTGATGATTCACATCTTGGAGCATTGCAAAGAGTAGATTGGTTAGTCCACAAGTTAACAACTGAGTTGCATTCAAGCTACTGGCTTGACCGGTATGCTGATGAAAGTGATTCTTTCCAGAATGTGAAGGAAAAATATATAGCTTCTACATCATGGCATCGGGCACTTCAAATTCCGGACTATGCTGTTTCCTTGGATGATAAAGACCACCTCTTTGCCAAGGTTGTGAGCCAGAAAGATAGTAGCTTAACACATATAGTGTGGAATCCAGGATCTGAATTTGCATTCTGTGATTGTTCTTGGTCAATGCAAGGTAACCTTTGCAAGCATGTTGTCAAAGTAAACATGATTTGTGAAAATCTTAAAGGTTATCAACCATCCATGTCTTTCCGGTCTTTTCAAGAGGTTTTGATGGATCTATGGAAAAAGCCAGTGGATGATTCTTTTGCGTTGGATCTGTCATTGGCTTGGACCCATCAGATGCTAGATCAAATTCAAAAACAAGTTGAACTGAATAATTCTACTGATATTGGCACTGTAGTTAACAATATGCCACTGAAATGGGTTTCTAAGAAAGGCAGAACCTACATTGGCAAACCATCATCAAGTTTGGCTCTTCCTCATGGTAGCAGTAACACAAAAAGTGTGGTTGTGTATAAGAAGAATCGGAAACGGAAAAGATTGTCTCGATTAAGATGA

>Glyma18g39890.3   sequence type=CDS   gene model=Glyma18g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATAGTTGAATCCGTGGGGAAGATTCCTTTGCAAGACCCACCTGAGGAGGAGTTTTGTGCTGCTGACTTGACTTGGACCAAGTTTGGTAATGCTGAGCACCATGATGAGGTTGCCCTCATTCCCTATGACAGAGTTGATGCTTTTATAATTGGTGAATGCACTAATGTGGAGTGCCCGACTCGGTTTCATATCGAGAGAGGAAGGAAACGGACTATTGGAAACTTGAAGGAGTACAAGGACGATGAGTATCTGGAGTACAGGCTGTACTGGTGCTCGTTTGGCCCTGAAAATTATGGGGAGGGAGGAGGTATATTACCTAGTCGAAGGTATCGACTTAATACTCGAAATCGTGCTGCTAGACCTCAATCAATGCGAGGTTGTACTTGTCATTTTGTTGTCAAACGTCTTTATGCTCAGCCATCACTGGCACTTATTGTATACAATGAGAGGCGTCATATTAACAAGTCTGGTTTTATCTGCCACGGACCACTTGATAGAGATGCCATTGGCCCAGGCGCCAAAAAAATTCCGTATATTTGCAATGAAATTCAGCAGCAAACTATGTCCATGATATATTTGGGCATCCCAGAAGAGAATATCTTGGAGAAACACATAGAAGGAATTCAGCGATATTGTGGTTCAGATGCAAAAGTCAGTAGCCTTGCTTCTCAGTATGTCCACAAGCTAGGGATGATTATCAAAAGGTCTACCCATGAGCTGGATCTAGATGATCAAGCTAGCATCCGCATGTGGATTGAACGCAATAGAAAGTCTGTATTTTTTCACCAGGATACTTCAGAGTCTGACCCTTTCATCTTGGGGATCCAAACAGAATGGCAGCTGCAACAAATGATTCGTTTTGGTCATCGAAGTGTTGTTGCAGCAGACTCTACGTTTGGTGTGAAGAGACTTAAATATCCCTTGTTCACACTACTTGTTTTTGATTCAAGACAACATGCACTTCCTGTCGCATGGGTCATTACACGTAGCTTTACAAAGCCTGATGTGTCTAAGTGGTTGAAAGCTTTAATTGATCGAGCTCGTAGTGTTGAGCCTGGATGGAAAGTCAGTGGATTTTTAATTGATGACGCTGCAGCTGAAATTGATCTTTTGAGAGATATATTTTGCTGTCCTGTCCTATTTTCACTATGGCGTGTTCGTAGATCATGGCTTAGGAATATTGTTAAGAAATGTAGTAATATTGAGATTCAGCGGGAGATTTTTAAGCGTCTTGGGAGAATAGTGTACAACATTTGGGGAGGTATTAATGCATCGCTTGCCTTGGAACAATTCTTGCTGGATTTTGTTGACCAAACTGCTTTCATGGAATATTTCAAAGTCATGTGGTTGCCCAAGCTTGAAATGTGGCTTTCAACGATGAGAAATTTTCCATTAGCAAGCCAGGAAGCTTCTGGAGCATTAGAAGCCTATCATGTTAAGCTGAAAGCCAAACTTTTTGATGATTCACATCTTGGAGCATTGCAAAGAGTAGATTGGTTAGTCCACAAGTTAACAACTGAGTTGCATTCAAGCTACTGGCTTGACCGGTATGCTGATGAAAGTGATTCTTTCCAGAATGTGAAGGAAAAATATATAGCTTCTACATCATGGCATCGGGCACTTCAAATTCCGGACTATGCTGTTTCCTTGGATGATAAAGACCACCTCTTTGCCAAGGTTGTGAGCCAGAAAGATAGTAGCTTAACACATATAGTGTGGAATCCAGGATCTGAATTTGCATTCTGTGATTGTTCTTGGTCAATGCAAGGTAACCTTTGCAAGCATGTTGTCAAAGTAAACATGATTTGTGAAAATCTTAAAGGTTATCAACCATCCATGTCTTTCCGGTCTTTTCAAGAGGTTTTGATGGATCTATGGAAAAAGCCAGTGGATGATTCTTTTGCGTTGGATCTGTCATTGGCTTGGACCCATCAGATGCTAGATCAAATTCAAAAACAAGTTGAACTGAATAATTCTACTGATATTGGCACTGTAGTTAACAATATGCCACTGAAATGGGTTTCTAAGAAAGGCAGAACCTACATTGGCAAACCATCATCAAGTTTGGCTCTTCCTCATGGTAGCAGTAACACAAAAAGTGTGGTTGTGTATAAGAAGAATCGGAAACGGAAAAGATTGTCTCGATTAAGATGA

Predicted protein sequences of Glyma18g39890

Limit To All Plant Sequences

>Glyma18g39890.2   sequence type=predicted peptide   gene model=Glyma18g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVECPTRFHIERGRKRTIGNLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTHELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADSTFGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSGFLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNIWGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASQEASGALEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNMICENLKGYQPSMSFRSFQEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNNSTDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALPHGSSNTKSVVVYKKNRKRKRLSRLR*

>Glyma18g39890.3   sequence type=predicted peptide   gene model=Glyma18g39890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVECPTRFHIERGRKRTIGNLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRAARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTHELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADSTFGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSGFLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNIWGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASQEASGALEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWHRALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVKVNMICENLKGYQPSMSFRSFQEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNNSTDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALPHGSSNTKSVVVYKKNRKRKRLSRLR*

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