SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02100 | AT | Annotation by Michelle Graham. TAIR10: Oxysterol-binding family protein | chr5:413639-416016 FORWARD LENGTH=453 | SoyBase | E_val: 0 | ISS |
| GO:0006888 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport | SoyBase | N/A | ISS |
| GO:0008202 | GO-bp | Annotation by Michelle Graham. GO Biological Process: steroid metabolic process | SoyBase | N/A | ISS |
| GO:0009567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double fertilization forming a zygote and endosperm | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005783 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0008142 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxysterol binding | SoyBase | N/A | ISS |
| GO:0032934 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sterol binding | SoyBase | N/A | ISS |
| KOG2209 | KOG | Oxysterol-binding protein | JGI | ISS | |
| PTHR10972 | Panther | OXYSTEROL-BINDING PROTEIN | JGI | ISS | |
| PTHR10972:SF8 | Panther | OXYSTEROL-BINDING PROTEIN-RELATED | JGI | ISS | |
| PF01237 | PFAM | Oxysterol-binding protein | JGI | ISS | |
| UniRef100_B9T255 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Oxysterol binding protein, putative n=1 Tax=Ricinus communis RepID=B9T255_RICCO | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EFA1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EFA1 related cluster n=1 Tax=unknown RepID=UPI000233EFA1 | SoyBase | E_val: 0 | ISS |
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Glyma18g39880 not represented in the dataset |
Glyma18g39880 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15930 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g182000 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g39880.1 sequence type=CDS gene model=Glyma18g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTCCAAAGGATCCCAAGCAAGTTGCTGCTGCTTCTGGTGGTGGGGGTGGCTTTTTTGCTTCTATTGCTTCCAGTTTGTCCAATTTTGGCAGTGCCATGTCCAAATCCGTTAATGGTTTGGTGGGCTACGAGGGGCTGGAGGTTATTAATCCAGAAGGAGGAACTGAAGATGCTGAAGAGGAAGCAAAAAAGGGACGATGGAAACAAGAGGAGCGAGATGGTTACTGGAAAATGATGCAAAAGTATGTTGGCTCTGATATCACATCAATGGTGACACTTCCGGTTATCATTTTTGAGCCAATGACAATACTTCAGAAAATGGCTGAGCTTATGGAGTACTCTTACCTGTTAGATATGGCAGATAAGACTGAGGATCCATACATGAGACTAGTATATGCTTCATCATTCTTTATATCCATCTACTATGCCTATCAACGAACATGGAAGCCATTCAATCCAATTCTTGGTGAGACTTATGAAATGGTTAACCATGGTGGCATTACATTTATATCAGAGCAGGTCAGCCATCACCCTCCAATGAGTGCTGGGCATGCTGAAACTGAACATTTCACTTATGATATAACATCAAAATTGAAAACCAAATTTCTTGGCAACTCAGCTGATTTATATCCTGTTGGAAGAACGCGTGTTACTCTCAAAAGAGATGGTGTGGTCCTTGATTTGGTGCCTCCTCCTACAAAAGTTAGCAACTTGATTTTTGGACGAACTTGGATTGATTCATCAGGAGAGATGATCCTGACAAATCTGACTACAGGGGACAAAGTGGTGCTGTATTTTCAACCATGCGGCTGGTTTGGAGCTGGTAGATATGAAGTGGATGGATTTGTGTATAATTCTGCTGACGAGCCTAAGATACTGATGACTGGAAAATGGAACGAGGCAATGAATTATCAACTTTGTGACTCAGAGGGAGAACCACTTCCAGGCACAGAGCTGAAAGAGATTTGGAGAGTTGCTGATGCCCCCAAGAAGGACAAATTCCAGTACACGCATTTTGCACACAAGATTAACAGCTTTGACACTGCTCCCAAGAAGTTGTTGGCATCTGATTCTCGTCTACGTCCCGATAGAATGGCCCTTGAGAAGGGTGACCTATCCACATCTGGTTATGAGAAGAGCAGTTTGGAGGAGAGGCAAAGAACTGAGAAGAGAAACCGAGAGGCCAAGGGCCATAAGTTCACTCCTAGATGGTTTGATTTAACTGATGAAGTAACTCCGACCCCTTGGGGTGACTTGGAAGTTTACCAATACAATGGTAAATATACCGAACATCGCGCTGCTGTTGATAGTTCTGAGTGCATAGAGGTGCCTGACAGCAGAACAGAATTCAACCCTTGGCAATATGATAATTTGGATGCTGAATAA
>Glyma18g39880.1 sequence type=predicted peptide gene model=Glyma18g39880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAPKDPKQVAAASGGGGGFFASIASSLSNFGSAMSKSVNGLVGYEGLEVINPEGGTEDAEEEAKKGRWKQEERDGYWKMMQKYVGSDITSMVTLPVIIFEPMTILQKMAELMEYSYLLDMADKTEDPYMRLVYASSFFISIYYAYQRTWKPFNPILGETYEMVNHGGITFISEQVSHHPPMSAGHAETEHFTYDITSKLKTKFLGNSADLYPVGRTRVTLKRDGVVLDLVPPPTKVSNLIFGRTWIDSSGEMILTNLTTGDKVVLYFQPCGWFGAGRYEVDGFVYNSADEPKILMTGKWNEAMNYQLCDSEGEPLPGTELKEIWRVADAPKKDKFQYTHFAHKINSFDTAPKKLLASDSRLRPDRMALEKGDLSTSGYEKSSLEERQRTEKRNREAKGHKFTPRWFDLTDEVTPTPWGDLEVYQYNGKYTEHRAAVDSSECIEVPDSRTEFNPWQYDNLDAE*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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