SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g39771

Feature Type:gene_model
Chromosome:Gm18
Start:47890776
stop:47893894
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g39771
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37630AT Annotation by Michelle Graham. TAIR10: myb-like HTH transcriptional regulator family protein | chr2:15781798-15782901 REVERSE LENGTH=367 SoyBaseE_val: 1.00E-156ISS
GO:0008356GO-bp Annotation by Michelle Graham. GO Biological Process: asymmetric cell division SoyBaseN/AISS
GO:0009615GO-bp Annotation by Michelle Graham. GO Biological Process: response to virus SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009739GO-bp Annotation by Michelle Graham. GO Biological Process: response to gibberellin stimulus SoyBaseN/AISS
GO:0009751GO-bp Annotation by Michelle Graham. GO Biological Process: response to salicylic acid stimulus SoyBaseN/AISS
GO:0009753GO-bp Annotation by Michelle Graham. GO Biological Process: response to jasmonic acid stimulus SoyBaseN/AISS
GO:0009944GO-bp Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis SoyBaseN/AISS
GO:0009946GO-bp Annotation by Michelle Graham. GO Biological Process: proximal/distal axis specification SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010338GO-bp Annotation by Michelle Graham. GO Biological Process: leaf formation SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0045088GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of innate immune response SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0050832GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to fungus SoyBaseN/AISS
GO:0000793GO-cc Annotation by Michelle Graham. GO Cellular Compartment: condensed chromosome SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0042803GO-mf Annotation by Michelle Graham. GO Molecular Function: protein homodimerization activity SoyBaseN/AISS
KOG0048 KOG Transcription factor, Myb superfamily JGI ISS
PTHR10641Panther MYB-RELATED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_Q4VPE6UniRef Annotation by Michelle Graham. Most informative UniRef hit: Phantastica transcription factor a n=1 Tax=Glycine max RepID=Q4VPE6_SOYBN SoyBaseE_val: 0ISS
UniRef100_UPI000233EF9EUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EF9E related cluster n=1 Tax=unknown RepID=UPI000233EF9E SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g39771
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g39771 not represented in the dataset
Glyma18g39771 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g39771
ParalogEvidenceComments
Glyma07g15850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g39771 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g181300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g39771
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma18g39771
>Glyma18g39771.2   sequence type=transcript   gene model=Glyma18g39771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACCCTCTCTTTCTCTCTGTCATACTGTGGGGTCTCTCACCATGTCTTGTCTTATCACGCTTTCCTCTCTCTCTCTCTCTGGTCCATTTTTACTTCACTTCTTTGTCTTTACTCCAACACTCTCTCTCCAACCTCGGTTTCCACTTTCTCTCTGTTTAAGAAGGAACCCACCACTTCTTCAACTTGGTGCCGTTTATTCATGGACCAGAAGAATACATCATAGCTTCTTTCTCATTTCACACACACAAGAACCTTGAGACATCATGAAGATTTCAAGTTCCAAGCAATTGGCTGTGGGATTTGCACTTGGAAATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTTCGTGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAACCCGGCATTAAAAAAGGATCTCTTACTGAGGAAGAGCAGCGTCTAGTCATCAATCTTCAAGCAACGCACGGGAACAAGTGGAAGAAAATTGCAGCACAAGTCCCTGGTCGCACTGCGAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGGGAAACCAAGGGGAATAGCTGCACTATTGACCCAATTAGCGATAGCAAGTACGAGCATATCCTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCTTTTCTGCACGCTGATGCACCGGCTCCTCCACCGGCCTTGCTTCCATCTTGGCTTTCCAATTCCAATGGCACTGCACCTGTGAGGCCACCTTCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCCCTGTGAGAGGACCGGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCGCCTCACGGGGCAGTTCTAGCATTTGGTGAGAACATGGTGATGTCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGATGAAGTGCATCATGCTTTGGCCGGACATAAGAAGGAGGCGGCATGGCGGTTAAGTAGGGTGGAGCTGCAGTTGGAGTCCGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCGAAGATCAAAGCTCTGAGAGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATATAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACTAAGTTTCTAGAACAGGTAGGGTGCAGATCAAGGCTCACTGAACCAAATGGAAGATAGAGTGACACCATTCACAATTGGGAAATCTAGTTTGCTTTTACTTATTATGTCTTGAATTTATATGATATGAACTTTATAGTCATAGTAGTTTTGTTCCTGTCATTATTCTGAAAAATGTTGTTACATATGGTTATTAATATCCCTATCTTTTCATACAACTTGAGGACTTGCATTAGTGGTTGGTGTATGTTTACATATAACGTCCTTTATGAATATGAACTTTTGTTATTATTCAAATTTTCCTCAATATATAGATACCTTTCACCTTGTTAGTTGTTACTTCCTAAAGGGGCATAGCTGAATAGAATTGAAATTG
Coding sequences of Glyma18g39771
>Glyma18g39771.1   sequence type=CDS   gene model=Glyma18g39771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTTCGTGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAACCCGGCATTAAAAAAGGATCTCTTACTGAGGAAGAGCAGCGTCTAGTCATCAATCTTCAAGCAACGCACGGGAACAAGTGGAAGAAAATTGCAGCACAAGTCCCTGGTCGCACTGCGAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGGGAAACCAAGGGGAATAGCTGCACTATTGACCCAATTAGCGATAGCAAGTACGAGCATATCCTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCTTTTCTGCACGCTGATGCACCGGCTCCTCCACCGGCCTTGCTTCCATCTTGGCTTTCCAATTCCAATGGCACTGCACCTGTGAGGCCACCTTCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCCCTGTGAGAGGACCGGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCGCCTCACGGGGCAGTTCTAGCATTTGGTGAGAACATGGTGATGTCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGATGAAGTGCATCATGCTTTGGCCGGACATAAGAAGGAGGCGGCATGGCGGTTAAGTAGGGTGGAGCTGCAGTTGGAGTCCGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCGAAGATCAAAGCTCTGAGAGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATATAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACTAAGTTTCTAGAACAGGTAGGGTGCAGATCAAGGCTCACTGAACCAAATGGAAGATAG

>Glyma18g39771.2   sequence type=CDS   gene model=Glyma18g39771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGATAGGCAACGTTGGAGAGCTGAAGAGGATGCTTTACTTCGTGCATATGTCAAACAGTATGGTCCTAGGGAATGGAATCTCGTGTCTCAGCGCATGAACACACCTCTTAACAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTCAAACCCGGCATTAAAAAAGGATCTCTTACTGAGGAAGAGCAGCGTCTAGTCATCAATCTTCAAGCAACGCACGGGAACAAGTGGAAGAAAATTGCAGCACAAGTCCCTGGTCGCACTGCGAAGAGGTTAGGGAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGGGAAACCAAGGGGAATAGCTGCACTATTGACCCAATTAGCGATAGCAAGTACGAGCATATCCTTGAGAGTTTTGCAGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAACAGTTCTTTTCTGCACGCTGATGCACCGGCTCCTCCACCGGCCTTGCTTCCATCTTGGCTTTCCAATTCCAATGGCACTGCACCTGTGAGGCCACCTTCCCCTTCTGTGACTCTTAGTCTTTCTCCCTCGACGGTGGCAGCGCCTCCTCCATGGTTGCAGCCCCCTGTGAGAGGACCGGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCGCCTCACGGGGCAGTTCTAGCATTTGGTGAGAACATGGTGATGTCTGAGTTGGTGGAGTGCTGCAAGGAGTTGGATGAAGTGCATCATGCTTTGGCCGGACATAAGAAGGAGGCGGCATGGCGGTTAAGTAGGGTGGAGCTGCAGTTGGAGTCCGAGAAGGCCGGCCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCGAAGATCAAAGCTCTGAGAGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATATAGGGAGCAGTTGGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACTTGCGCCTTACTAAGTTTCTAGAACAGGTAGGGTGCAGATCAAGGCTCACTGAACCAAATGGAAGATAG
Predicted protein sequences of Glyma18g39771
>Glyma18g39771.1   sequence type=predicted peptide   gene model=Glyma18g39771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNSCTIDPISDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHADAPAPPPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLQPPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELDEVHHALAGHKKEAAWRLSRVELQLESEKAGRRREKMEEIEAKIKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLTEPNGR*

>Glyma18g39771.2   sequence type=predicted peptide   gene model=Glyma18g39771   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNSCTIDPISDSKYEHILESFAEKLVKERPSPSFVMATSNSSFLHADAPAPPPALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPPWLQPPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELDEVHHALAGHKKEAAWRLSRVELQLESEKAGRRREKMEEIEAKIKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHLRLTKFLEQVGCRSRLTEPNGR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo