SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G02310 | AT | Annotation by Michelle Graham. TAIR10: proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006 | SoyBase | E_val: 0 | ISS |
| GO:0006511 | GO-bp | Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process | SoyBase | N/A | ISS |
| GO:0009737 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus | SoyBase | N/A | ISS |
| GO:0010029 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of seed germination | SoyBase | N/A | ISS |
| GO:0050994 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of lipid catabolic process | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0004842 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG1139 | KOG | Predicted ubiquitin-protein ligase of the N-recognin family | JGI | ISS | |
| PTHR21497 | Panther | UBIQUITIN LIGASE E3 ALPHA-RELATED | JGI | ISS | |
| PTHR21497:SF6 | Panther | UBIQUITIN LIGASE E3 ALPHA | JGI | ISS | |
| PF02207 | PFAM | Putative zinc finger in N-recognin (UBR box) | JGI | ISS | |
| UniRef100_G7L5H7 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: E3 ubiquitin-protein ligase ubr1 n=1 Tax=Medicago truncatula RepID=G7L5H7_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233EF9C | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EF9C related cluster n=1 Tax=unknown RepID=UPI000233EF9C | SoyBase | E_val: 0 | ISS |
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Glyma18g39750 not represented in the dataset |
Glyma18g39750 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15840 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g181200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g39750.1 sequence type=CDS gene model=Glyma18g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCGATAACATGGAAATCGATATTCCCTCCGATTCCCAGCCGCTCAAGCCTCGCGATCGAGTTGTTCGGAGGCTTGCCCAGTTTGGTGTTCCTGAGGAGCAGCTCGACCAACCTGGTTTGGTTGCTTTTGTTAAGGATAAGAGGGCGTTGATACCTGAGCTGGTGTCTGTGATATTGCCTACTGATGCGGAAGTGGCAGATGCATGGGAAGCTAAATTTTCTTCTAAGAAGACGGCGGTGGGTGTGATCATGAAGAAGAGGTTTAACGAGAGCATGGTGTGGTTGCAGTGGTTGATGTTTGAGGGTGACCCGGGTGGTGCACTGAGAAGGCTTTCCAAGATGTCTGTTGGGCAGAGGGGTGTCTGTGGGTCTGTTTGGGGCAACAGTGATATTGCTTACAGGTGTAGGACATGTGAGCATGACCCAACGTGCGCAATCTGTGTTCCTTGTTTCGAGAATGGGAATCACAAGGGCCATGATTACTTTGTTATATACACGGGCGGCGGTTGCTGTGATTGTGGGGATGTAACCGCATGGAAGCGTGAGGGATTCTGCTTGATGCATAAGGGTGCTGAGCAGATACAACCGCTTCCGGAAGAATTTGCAAACTCCGTTGATCCTGTGCTTGGTTCCCTTTTCAATTGTTGGAAAGTCAAGCTAACATTGGCGAGTGAGTCAGTTACTGAAAAAAAGCATGTAGCAAATGAGCTAACTTATGCCGTGGTTGATATGCTTCTAGAATTTTGCAAGCATAGTGAGAGTTTGCTCAGTTTTGTTGCTAGGTTGTTGTTTTCTTCTAATGGTTTAATTTACATGCTGGTGAGAGCTGAGAGGTTCTTAACTGAGGTTGTTGTAAATAAACTCCATGAGCTACTCCTGAAATTGTTAGGAGAACCAAAATTTAAGTATGATTTTGCTAAAGTTTTTATCACTTACTATCCAACTGTCATAAATGAGGCCACAAAAAAAAACAATGACTCTTGTCTAACGAAGTACCCGCTACTACCCACGTTCTCTGTGCAGATACTTACTGTGCCCACTCTTACCCCACGTCTTGTGAAGGAAATCAACCTACTTACCATGCTGTTGGGATGCTTTGAAAATATTTTCATTTCTTGTTCTGAAGATGGACGCTTACAGGTTTCCATGTGGGTAGGTTTATATGAGACAACAATACGTGTTATTGAAGATATTCGATTTGTTATGAGCCATGTGGTAGTGCCCAAATATGTAACTAATGACCAGCAAGATATCTCAAGAACATGGATGAGACTTCTTTCCTTTGTACAAGGGATGGGCCCTCAAAAGAGAGAAACAGGTCAACATATAGAAGATGAAAATGAGAATGTCCATTTGCCTTTTATTTTAGGGCATTCTATTGCCAATATTCACTCTCTATTGGTGGATGGGGCATTTTCTGATGCTAGCAAGGGAGAAATGGATGGAGAAATTGTTTGGAGCTCTAGTAAGAATGATTCAGATGATGGAGATAATCTAAGGCATGCAAAGGTAGGACGGAGATCTGAGGAAAGCTCTGCATGTAATGTGACCAGTAGGAATAGTGCCTTAGCTTCTAGAAAGCTTCATGAGATAAAAGCCGATGCCTCTTCTCAGCTGCCTCTTCCACTTTCTGTCTCTTGGTTGATATACGAGTGTTTAAGGGCTATTGAGAATTGGTTGAGAGTCGAGAATACCCCTGGTGCAATTCCTAATGCACCATCTCCGAACAGTGGTGCTGTCTGTGATGGCAATTTTTCAGCATTTAAGAGAACAATATCCAAGTTTGGAAGGGGTAGATATACATTTGGTAGGCTTGTAAGTTCTAGTGAAGATCATGGTAAGCAGTGTTCTGAAAATAATGAAATTGATTCAGAAAATACCTGTATGCGTCCCACGTTTGATGATAATGCCATGGAAGAAGATTTCCCCGTGGAATCAGATGGTCCGCGTTTTTTGTCATTGCCTGATTGGCCACAAATAGCCTATGATGTTAGTTCACAAGATATATCTGTACACATTCCATTACATAGATTGCTTTCCATGCTGTTACAGAAGGCAATGAAAAGATATTTTTGTGAATCTGAAGGGTCAGATGTGACTCATGTTTCTTCAGCTAATTCATTGCCGACTAGCTACAATGACTTCTTTGAACAAGCTTTACGAGGAAGTCATCCATATGGTTTCTCTGCCTATATAATGGAGCACCCATTGAGGATTAGGGTCTTTTGTGCCGAAGTCCATGCTGGAATGTGGCGTAAAAATGGAGATGCTGCTTTATTATCTTGTGAATTGTATAGATCAGTACGCTGGTCTGAACAAGGTCTGGAGCTTGATCTATTTCTTCTTCAGTGTTGTGCTGCACTAGCTCCAGAGGATCTATTTGTCAGTAGAATTCTGGAGCGCTTCGGGCTGTCAAACTACTTATGTCTAAATGTTGAACGGTCTAGCGAATATGAACCTGTTTTAGTCCAGGAAATGCTTACTCTTATTATTCAGATAGTAAAAGAACGACGCTTTAGTGGGCTAACTACTGCTGAATGTTTGAAAAGAGAACTAATTTATAAGTTATCCATTGGTGATGCCACTCATAGTCAATTGGTTAAGTCTCTTCCTCGTGATCTCTCCAAGTTTGAACAACTTCAAGACATCTTGAATACAGTTGCTGTTTATTCTAATCCATCTGGATTTAATCAGGGTATGTATTCTCTGCGATGGCCATTTTGGAAAGAATTGGATTTGTATCATCCACGTTGGAATTCAAAGGATTTACAAGTTGCTGAAGAAAGATACATGCACTTCTGCAGTGTCTCTGCACTAACCACCCAATTGCCCCAGTGGACCAAAATTCATCCTCCTTTAAGGGGGATAGCCAGAGTAGCCACTTGCAAAGTTGTTCTACATATTATCCGTGCTGTGCTATTTTATGCTGCTTTCACTTTTAAATCATCTGAATCTTGTGCTCCTGATAGCGTTCTTCTACCTGCTCTACATTTACTGTCATTATCATTAGATATCTGTTTTCAGCAGAAAGAATCTAGGGAGAATACATGCCACGATGTGTCTCATCTTCCAATAATAGCCTTCTCTGGAGAAATAATTGAGAGTTCTTTCGGTGAACAAAGCTTGTTGTCACTTCTTGTTTTACTGATGGAAATGCACAGGAAGGAAAATGTCGACAACTTTGTGGAAGCAGGTGGTTGTAGTCTATATACTCTGATTGAAAGCTTACTGAAGAAATTTGCTGAGATTGACAACAGATGCATGACTATGTTGCAAAAACTTGCCCCTGAAGTGGTCAGTTATATTTCTGAATATGTTCCGACTAGAGACTCAAGTGTCTCATCGTCGGCTTCTGATAGTGAGAAACGCAAAGCAAAAGCTCGAGAGAGGCAGGCTGCAATAATGGAAAAAATGAGAACCCAGCAGTCTAAATTCTTGGCCAGCATTGATTCCACTGTTGATGATAGTTCACAACTTGGTCATGAAGGTGACTTAGACACTGAGCAAGATGCAGAAGAATTCGATTCTAAACAAGTTGTTTGCTCCCTTTGTCATGACCATAATTCAAAACATCCTATCTCTTTTTTGATTCTTCTTCAGAAATCTAGGCTTGTGAGTTCCGTTCACCGGGGTCCTCCATCGTGGGCCCAACTTTGTCGATCAGATAAAGATCACACACCTATCATTAACACCAAGGAGACGGATACATTGCCTATGAACTGTAATTCAGTTAGTTCAGGATCAACTTCATCTTCCCACTTAAGTCAATTTGTTCAGAATGCTGCGAAAGAATTAGCTTCTTGTGGGAAACCTGGGGAAGCTCTTACTTTTCTGCAATATGTCAAGAATAAGTTCCCAGCTTTGTCAAATTTTCAGCTCCCAGACACATATTATGATGAAAAAGAAAATACACCATATACTTTTGAGACTTTAGAACAGGGTATGTACTTCTCCATTTGTGCTGAAATGCATGATCTTCTGTTATCTTCGAATTTGATGAATGAGGATGAGAAAGTTTCAATTGCTGGAGGGAGTTCAAATCTTATAATAGACACTGGATCTGTATTGCTTGGGAAATATACCGCCGATCTTCTGCAAGAGATGTCAGAAATTTCTTCTGTGTCTGAAAGTGCTTCTAATGAGACTGCTTCTGTAGAATCAACATCACAGCATCCAGCATATGATGGATTTGGCCCTACAGATTGCGATGGAGTTCATCTTTCTTCCTGTGGGCATGCAGTACATCAAGCGTGTCTTGATAGATATTTATCTTCATTAAAGGAAAGATCTGTCAGAAGAATTGTTTTTGAAGGAGGACATATTGTTGACCCAGATCAGGGAGAGTTTCTCTGCCCAGTGTGCCGCAGACTTGCAAATTGTGTCTTGCCAACTTTACCTGGAGAATTACAGAAGCCTTTTAAGCAGTCTACCATCTTGAGTACTGATTCAATAAATACTGCACCCCCCTTAGCTGAATTGAGTGAATTGACTTATTCACTTCGCCTCCACCTAGGCTTAAAGCTTCTGCAATCTGCTGCCAATGCAGTTGGGAAGGATAAATTTCTAAATGCTATTCCTTTGCATCACATTGATAGAACTAGAACAAATCTTGAAAACTTCATACGGTGGCTTTCTAAAATGTATTCCCCTTGCAAAGAAGAGAAGCTATCAAGATTTTCCAGACTAAACCACTCAATGCTAATGTGGGACACTCTCAAGTACTCTTTGACATCAATGGAGATTGCTGCCCGGTGTGGAAAGACTTCTTTAACTCCAAACTTTGCTCTTAGTGCATTGTATGAAGAACTCAAATCTTCAAGTGGCTTTATCTTATCCCTGATGCTGAAACTTGTTCAAAAGACACGAAGTAATAATTCTCTTCATGTGCTACAAAGATTTAGAGGTGTTCAACTCTTTGCAGAATCAATTTGTTCTGATGTTTCCCTGAATTACACAAATAATGAGTCTGGGACAGGTGATATGTTAAGTATCTTAAAGCATATTGATATGGACCTGTCAAACACCTACATTAGCTTTTGGAGTCAGGCTTCAGATCCTGTACTTTTCCATGACCCTTTCTCAACATTGATGTGGGTTCTCTTTTGTCTACCACACCCGTTTTTGTCATGTGAAGAATCCTTGTTATCCCTAGTGCATGTTTTCTATATAGTAGCTGTAACCCAGGCTATAATTTTGTATTATGAGAAATCTAAGGATAAACCATCAAGGGAATCAGCTCTTTCAGATTGTCTGATTACCGACATATATAACGTGATGGATGAGTCTGGATATACCCAGCAGTACTTTGTGTCAAATTATTTTGACCCTAATGGTGATATTAAAAATGCTATTCGGAGGTTTACTTTTCCTTATTTGAGAAGATGTGCATTGTTGTGGAAGATACTCTATTCTTCTATCCCTGCACCATTCTGTGATGAGGAAAATATATTGGATAGATCATGGATTGCCCCAAAGGACACAATGGACAGGGCCAATATTGAGATATTTGAGGTCACTAAAATTCAAGAGCTCGAGAAAATGTTTAAAATTCCCTCTCTTGATGTGGTTCTCAAGGATGAACTTTCAAGATCTACAGTCTCTATTTGGTGTCATCATTTTTGCAAGGAATTTGACTTGCGCAGAATTCAGCAAAATATGCATGTAACACCTGCTGTTCCATTTGAGTTAATGAGATTGCCCAATGTTTATCAGGATCTTTTGCAGAGATGTATCAAACAGCGCTGCCCTGATTGCAAATCAGTTCTTGATGAACCAGCTTTGTGCCTACTGTGTGGTAGATTGTGCTGTCCTATTTGGAAATCATGCTGCAGGGAAAATGGATGCCAAACTCATGCCGTAGGCTGTGGAGCTGGTACTGGAGTGTTTCTGTTGATTAGGAGAACAACAATCCTACTACTGAGATCTGCACGTCAGGCCCCCTGGCCCTCTCCTTACTTAGATGATTTTGGCGAGGAGGATTTTGAAATGAATCGAGGCAAGCCACTTTACCTGAATGAGGAACGCTATGCTGCTTTGACTTATATGGTCGCTTCTCATGGTCTGGACCGTAGTTCCAGGGTTCTTGGTCGGACCACTATTGGTTCCTTCTTCCTGGTTTAG
>Glyma18g39750.1 sequence type=predicted peptide gene model=Glyma18g39750 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MADNMEIDIPSDSQPLKPRDRVVRRLAQFGVPEEQLDQPGLVAFVKDKRALIPELVSVILPTDAEVADAWEAKFSSKKTAVGVIMKKRFNESMVWLQWLMFEGDPGGALRRLSKMSVGQRGVCGSVWGNSDIAYRCRTCEHDPTCAICVPCFENGNHKGHDYFVIYTGGGCCDCGDVTAWKREGFCLMHKGAEQIQPLPEEFANSVDPVLGSLFNCWKVKLTLASESVTEKKHVANELTYAVVDMLLEFCKHSESLLSFVARLLFSSNGLIYMLVRAERFLTEVVVNKLHELLLKLLGEPKFKYDFAKVFITYYPTVINEATKKNNDSCLTKYPLLPTFSVQILTVPTLTPRLVKEINLLTMLLGCFENIFISCSEDGRLQVSMWVGLYETTIRVIEDIRFVMSHVVVPKYVTNDQQDISRTWMRLLSFVQGMGPQKRETGQHIEDENENVHLPFILGHSIANIHSLLVDGAFSDASKGEMDGEIVWSSSKNDSDDGDNLRHAKVGRRSEESSACNVTSRNSALASRKLHEIKADASSQLPLPLSVSWLIYECLRAIENWLRVENTPGAIPNAPSPNSGAVCDGNFSAFKRTISKFGRGRYTFGRLVSSSEDHGKQCSENNEIDSENTCMRPTFDDNAMEEDFPVESDGPRFLSLPDWPQIAYDVSSQDISVHIPLHRLLSMLLQKAMKRYFCESEGSDVTHVSSANSLPTSYNDFFEQALRGSHPYGFSAYIMEHPLRIRVFCAEVHAGMWRKNGDAALLSCELYRSVRWSEQGLELDLFLLQCCAALAPEDLFVSRILERFGLSNYLCLNVERSSEYEPVLVQEMLTLIIQIVKERRFSGLTTAECLKRELIYKLSIGDATHSQLVKSLPRDLSKFEQLQDILNTVAVYSNPSGFNQGMYSLRWPFWKELDLYHPRWNSKDLQVAEERYMHFCSVSALTTQLPQWTKIHPPLRGIARVATCKVVLHIIRAVLFYAAFTFKSSESCAPDSVLLPALHLLSLSLDICFQQKESRENTCHDVSHLPIIAFSGEIIESSFGEQSLLSLLVLLMEMHRKENVDNFVEAGGCSLYTLIESLLKKFAEIDNRCMTMLQKLAPEVVSYISEYVPTRDSSVSSSASDSEKRKAKARERQAAIMEKMRTQQSKFLASIDSTVDDSSQLGHEGDLDTEQDAEEFDSKQVVCSLCHDHNSKHPISFLILLQKSRLVSSVHRGPPSWAQLCRSDKDHTPIINTKETDTLPMNCNSVSSGSTSSSHLSQFVQNAAKELASCGKPGEALTFLQYVKNKFPALSNFQLPDTYYDEKENTPYTFETLEQGMYFSICAEMHDLLLSSNLMNEDEKVSIAGGSSNLIIDTGSVLLGKYTADLLQEMSEISSVSESASNETASVESTSQHPAYDGFGPTDCDGVHLSSCGHAVHQACLDRYLSSLKERSVRRIVFEGGHIVDPDQGEFLCPVCRRLANCVLPTLPGELQKPFKQSTILSTDSINTAPPLAELSELTYSLRLHLGLKLLQSAANAVGKDKFLNAIPLHHIDRTRTNLENFIRWLSKMYSPCKEEKLSRFSRLNHSMLMWDTLKYSLTSMEIAARCGKTSLTPNFALSALYEELKSSSGFILSLMLKLVQKTRSNNSLHVLQRFRGVQLFAESICSDVSLNYTNNESGTGDMLSILKHIDMDLSNTYISFWSQASDPVLFHDPFSTLMWVLFCLPHPFLSCEESLLSLVHVFYIVAVTQAIILYYEKSKDKPSRESALSDCLITDIYNVMDESGYTQQYFVSNYFDPNGDIKNAIRRFTFPYLRRCALLWKILYSSIPAPFCDEENILDRSWIAPKDTMDRANIEIFEVTKIQELEKMFKIPSLDVVLKDELSRSTVSIWCHHFCKEFDLRRIQQNMHVTPAVPFELMRLPNVYQDLLQRCIKQRCPDCKSVLDEPALCLLCGRLCCPIWKSCCRENGCQTHAVGCGAGTGVFLLIRRTTILLLRSARQAPWPSPYLDDFGEEDFEMNRGKPLYLNEERYAALTYMVASHGLDRSSRVLGRTTIGSFFLV*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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