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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G07950 | AT | Annotation by Michelle Graham. TAIR10: DNA-directed RNA polymerase, subunit M, archaeal | chr4:4798910-4799510 FORWARD LENGTH=106 | SoyBase | E_val: 5.00E-41 | ISS |
| GO:0006351 | GO-bp | Annotation by Michelle Graham. GO Biological Process: transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0006354 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA-dependent transcription, elongation | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0003676 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0003899 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA-directed RNA polymerase activity | SoyBase | N/A | ISS |
| GO:0008270 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: zinc ion binding | SoyBase | N/A | ISS |
| KOG2906 | KOG | RNA polymerase III subunit C11 | JGI | ISS | |
| PTHR11239 | Panther | DNA-DIRECTED RNA POLYMERASE | JGI | ISS | |
| PTHR11239:SF2 | Panther | DNA-DIRECTED RNA POLYMERASE II | JGI | ISS | |
| PF01096 | PFAM | Transcription factor S-II (TFIIS) | JGI | ISS | |
| UniRef100_I1N2G1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DNA-directed RNA polymerase subunit n=1 Tax=Glycine max RepID=I1N2G1_SOYBN | SoyBase | E_val: 6.00E-77 | ISS |
| UniRef100_UPI000233EF98 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233EF98 related cluster n=1 Tax=unknown RepID=UPI000233EF98 | SoyBase | E_val: 1.00E-77 | ISS |
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Glyma18g39550 not represented in the dataset |
Glyma18g39550 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma07g15730 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.18g179600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g39550.2 sequence type=transcript gene model=Glyma18g39550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ACTTTTATATTTTTGACAGCAATTGGATGCACCAAATGTCGCGATTTATTTCACTTGCTCAAAACGTCTGAGCCCGTCTCACCCTCCACGCAGCATTTCCCTGCTTAAACCCTCCAGCAGCCTCCAAACAAAAACCCTAATTCACTAACCCCATTTCAAATCCCAATCACGTTTCCGATCAATCATCACCTTCTCCATAATCTCTCCGTTCGCGTCGCAAATCGAGCGAGATAGTGTCGAGTTGAACCAACGATCGAGAAGATATAGAAGATGGAGTTTTGCCCCAGTTGTGGTAACATGCTACAGTATGAATTGCCTTATATGGGTCGCCCTTCAAGATTTTTTTGTTCTGCTTGCCCATATGTTTGCCACATTGAGAATAGGGTTGAGATCAAAAGAAAGCAAAGGTTGGTGAGAAAAGAGATAGAGCCTATATTCTCCGAGGATGACATGACAAATGCACCATCAACTGAAGCGACGTGCCCATTTTGCGGTCATGGTAAAGCTGCTTTCAAAGAATTTCAGACTCGATCGGCTGATGAGCCAGCAACTCTATTTTATAAGTGCTTGAACAATGACTGTAAAAAACAATGGCGTGAAGGTTGACTTCAAACATGGCCTTATATTTCTTCATTTTGCTGAGGATAGAAAAGCTTTTGTTGTAATTGGGCCAATATGACAGCTAAGAGTGTTTGGATAGTTTTTACATTTTCGCTGACAATAATCTAAGTGATACATTTTATTTTTCTTTCTTTATTACTATCGAAGTTTGTTTTAGGGATTAGAAAATTGAGATGGTAAGCATTTCTCGTGTTTCATACGAAAGATTCCAAATTGCCCATTAGACAAAAGTTAATATGGTTGTTATTTCCTGTTGTAATTGTAATATGCTCAATTTACTCGGGTATTTCATATTGTTTTAAGTTTGATTTTTACAGTGTGGAATGTGGATCCACGCTTTCACATCAAATGTAACAAATGTAGAAGTTGCATATTTCTGATTAAAAAATGAGAAGTTGTGTTGAATATTTTTAAA
>Glyma18g39550.1 sequence type=CDS gene model=Glyma18g39550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTTGCCCCAGTTGTGGTAACATGCTACAGTATGAATTGCCTTATATGGGTCGCCCTTCAAGATTTTTTTGTTCTGCTTGCCCATATGTTTGCCACATTGAGAATAGGGTTGAGATCAAAAGAAAGCAAAGGTTGGTGAGAAAAGAGATAGAGCCTATATTCTCCGAGGATGACATGACAAATGCACCATCAACTGAAGCGACGTGCCCATTTTGCGGTCATGGTAAAGCTGCTTTCAAAGAATTTCAGACTCGATCGGCTGATGAGCCAGCAACTCTATTTTATAAGTGCTTGAACAATGACTGTAAAAAACAATGGCGTGAAGGTTGA >Glyma18g39550.2 sequence type=CDS gene model=Glyma18g39550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGTTTTGCCCCAGTTGTGGTAACATGCTACAGTATGAATTGCCTTATATGGGTCGCCCTTCAAGATTTTTTTGTTCTGCTTGCCCATATGTTTGCCACATTGAGAATAGGGTTGAGATCAAAAGAAAGCAAAGGTTGGTGAGAAAAGAGATAGAGCCTATATTCTCCGAGGATGACATGACAAATGCACCATCAACTGAAGCGACGTGCCCATTTTGCGGTCATGGTAAAGCTGCTTTCAAAGAATTTCAGACTCGATCGGCTGATGAGCCAGCAACTCTATTTTATAAGTGCTTGAACAATGACTGTAAAAAACAATGGCGTGAAGGTTGA
>Glyma18g39550.1 sequence type=predicted peptide gene model=Glyma18g39550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDDMTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWREG* >Glyma18g39550.2 sequence type=predicted peptide gene model=Glyma18g39550 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MEFCPSCGNMLQYELPYMGRPSRFFCSACPYVCHIENRVEIKRKQRLVRKEIEPIFSEDDMTNAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWREG*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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