|
A newer version of this gene model can be found here:
Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
---|---|---|---|---|---|
AT1G11910 | AT | Annotation by Michelle Graham. TAIR10: aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506 | SoyBase | E_val: 5.00E-41 | ISS |
GO:0006096 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glycolysis | SoyBase | N/A | ISS |
GO:0006508 | GO-bp | Annotation by Michelle Graham. GO Biological Process: proteolysis | SoyBase | N/A | ISS |
GO:0006623 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole | SoyBase | N/A | ISS |
GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
GO:0006833 | GO-bp | Annotation by Michelle Graham. GO Biological Process: water transport | SoyBase | N/A | ISS |
GO:0006972 | GO-bp | Annotation by Michelle Graham. GO Biological Process: hyperosmotic response | SoyBase | N/A | ISS |
GO:0007030 | GO-bp | Annotation by Michelle Graham. GO Biological Process: Golgi organization | SoyBase | N/A | ISS |
GO:0009266 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus | SoyBase | N/A | ISS |
GO:0009651 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to salt stress | SoyBase | N/A | ISS |
GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
GO:0048513 | GO-bp | Annotation by Michelle Graham. GO Biological Process: organ development | SoyBase | N/A | ISS |
GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
GO:0005773 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: vacuole | SoyBase | N/A | ISS |
GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
GO:0004175 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: endopeptidase activity | SoyBase | N/A | ISS |
GO:0004190 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity | SoyBase | N/A | ISS |
PTHR13683 | Panther | ASPARTYL PROTEASES | JGI | ISS | |
PTHR13683:SF85 | Panther | gb def: cg10104-pa [drosophila melanogaster] | JGI | ISS | |
PF00026 | PFAM | Eukaryotic aspartyl protease | JGI | ISS | |
UniRef100_Q94IA2 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase 1 n=2 Tax=Glycine max RepID=Q94IA2_SOYBN | SoyBase | E_val: 3.00E-46 | ISS |
UniRef100_Q94IA2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Aspartic proteinase 1 n=2 Tax=Glycine max RepID=Q94IA2_SOYBN | SoyBase | E_val: 3.00E-46 | ISS |
Glyma18g39210 not represented in the dataset |
Glyma18g39210 not represented in the dataset |
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
Corresponding Name | Annotation Version | Evidence | Comments |
---|
Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma18g39210.1 sequence type=CDS gene model=Glyma18g39210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTGACCAAGGTCTTCTTAAGGAATCAGTATTTTCATTTTGGTTCAACCGCAAACCAGAGGAAGAGGAAGGGGGCGAGATAGATTTTGGTGGTGTTGATCCTGTTCACTATAAGGGAAAGCACACTTATGTGGCTGTGACCACAAAAGGATATTGGCAGTTTGTTATGGGAGATGTACTTATTGGCGGTAAACCCACTGGATATTGTGCTAATGGTTGTTCAGCCATTGCAGACGCAGGGACTTTTTTGTTGGCA
>Glyma18g39210.1 sequence type=predicted peptide gene model=Glyma18g39210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVDQGLLKESVFSFWFNRKPEEEEGGEIDFGGVDPVHYKGKHTYVAVTTKGYWQFVMGDVLIGGKPTGYCANGCSAIADAGTFLLA
Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||