Glyma18g38830 - SoyBase

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Report for Sequence Feature Glyma18g38830

Feature Type:	gene_model
Chromosome:	Gm18
Start:	46631745
stop:	46636395
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G37670	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr2:15797384-15800536 REVERSE LENGTH=903	SoyBase	E_val: 0	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0048610	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular process involved in reproduction	SoyBase	N/A	ISS
GO:0048868	GO-bp	Annotation by Michelle Graham. GO Biological Process: pollen tube development	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005834	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: heterotrimeric G-protein complex	SoyBase	N/A	ISS
GO:0004871	GO-mf	Annotation by Michelle Graham. GO Molecular Function: signal transducer activity	SoyBase	N/A	ISS
KOG0283	KOG	WD40 repeat-containing protein	JGI		ISS
PTHR14221	Panther	WD REPEAT DOMAIN 44	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G7L3F0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7L3F0_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233E103	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233E103 related cluster n=1 Tax=unknown RepID=UPI000233E103	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g38830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g178000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g38830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38830

Limit To All Plant Sequences

>Glyma18g38830.2   sequence type=CDS   gene model=Glyma18g38830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCACCATGGAGCGCCGGAAAACGATGACCATGAATTGGGATGGCCTCGGCGACGACGATGACGACGACCACTTCTTCGAGACCTACAACCGCCTCTCCACCGCCGTGCCACAGGACCTCGCTGACGACGATGACGGCAATTTCGAAGACAGCCGCCTCTCCTTCGCCTCCACCATCTCCTCCACCCTCACCATCAAGCCCCGAACCTCACACTTCTCCGCAAACTTCACCGGAAAACCAAACTACGAAATCTGGATGGCCGCGCCGGGATCCATCTCCGAACGCCGAAGAAGGTTGCTGTGTAGTATGGGCCTCGACGAGAACAAGGAGCTGCTCCAAGCCACAAGCAAAGCCATCGCCCGCGCCATGACGAAAAAATTTGAAAACAACAATGACATCAACAACAACAACGATAATAACAACAACAAATACGCTGCCAATTCCATCGCCGTTCGTGTTGAAAAGCAGAAACCGTCGAGCTCACCGGTTTTCGTCCTTGTCCGATCGCGGTCCGAGGGCGACATTGACTCTTTTTCGATGGAGAAATCCAGGAAGGAGGAGATAATAGGAAAGGTGTCAAAGCAGCGGTTGACGAGAACCGTTACAGAGGTCGCTCAACGCCGGCATGCCCGCGTTGAGAACAACCGAGTGGTGGTGAAAGATGCGGCTGCTGGCGATTCCCTTGTGCACGTTGATGCACGGGTGAATCGCCAGGTAATCACGCCGGTCATGGGAGTGGCCGGCGTTAGCGCGTTTTTTTTAATAAAGAACCTGGACACGGGAAAAGAGTTTATAGTAAACGAATACGGAGAAGACGGCACGTGGAACAGGCTGAGTGATTTGCAGACGGGGAAGCAGTTAACGATGGAGGAGTTTGAGAAAACGGTGGGGCATTCTGCGGTGGTGAAAGAGGTTATGAGACGAGCCAACGTGGCACGTGGCGAGAAGAAGCTTTCTTCGAACTCCTACATTTCAAGGAGTTTGAGGTTAAGCAAGAGGCGAGGTGCGTCTTTGCTAAGGAACATAAAAGGTGTGGCGAGTGGATTCGTCGGGGAGCGTGAGCGCGAAGCGGTGGTTCCGCCGCAAGCGGCGGAACCGGCGGAACCGAAGGGGAAGAACAAATGGGTGCGCGTGAGGCAGAGTGGGAAGTCGCAAAAGGAGCTATCGGCGCTGCACCTATGCCAGGAGTTTGAGGCGCACGAGGGGTGCGTGTGGACGATAAAGTTCAGTTTGGATGGGAGGTATTTGGCGAGTGCGGGGGAGGACAAGGTAATACACGTGTGGGAGGTGCAGGAGTGGGAGGTTATGTCGTTGAGGCCCGAGGAGGGGAACTTGACGCCTATTCACCCGTCGTTGCTTTCGTCGATGACGAAAGGGAAGAATGGGAGCAGGAGAGGAGGTGCTGGAGCTATTCCGGAGTATGTTCATGTTCCGGAAACTGTGTTTACGCTATCCGAGAAGCCGTATTGTTCTTTCACTGGGCATTTGGACGAGGTCTTGGATTTGTCGTGGTCCAGATCTCAGTTACTTCTCTCATCTTCCATGGATAAAACAGTGAGGTTGTGGGATTTGGAAACTAAGTCGTGCTTGAAATTCTTTGCACATAATGACTATGTGACCTGCGTGCAGTTCAACCCCATGGATGAAGACTATTTCATTACTGGCTCCCTTGATGCCAAGGTCAGAATGTGGAACATCCCTGCACGCCTCGTTGTGGATTGGATTGATATCCATGAAATGGTTACTGCTGTTTCTTACACCCCTGATGGCCAGGGTGTTCTAGTTGGTACACAAAAAGGGAATTGTCGAACTTACAGCATAGAAGATTACAAGTTAACTCAATCTGACACAATCGAGCTTCGAAACAAAAAGAAATCTCAGCTGAAAAAGGTTACTGGTTTCCAGTTTGCCCCAAATAATCCATCAGAAGTGCTTGTTACTTCAGCTGATTCAAGGATAAGAATTGTCGATGGATCCCAAGTTGTTCAAAAGTTTAAAGGATTTCGAAATGCAAGCAGCCAAATGGCAGCTTCATTTACTACAAGTGGAAGGTACATCATTAGTGCAAGTGAAGACTCACAAGTGTATGTCTGGAAGCACGAAGAGACTCGCAATCCGAGCTCTGGAAAAGCAAGGAATCTGATTGTTAACCAATCTCACGAGCACTTCCCATGTAAAGATGTTTCAGTAGCAATACCTTGGCCATGTACCATAAGGGGTGATCCACCACCAGTGCCAATGCAAAACCCCAAAAAGAACTCAAAACGTTCGCAAGAGGACTCTGCAGCAAACAGCAAGAGAATGTTGCCACCTCTTCCAAAGAAAAGCAACAACCACACCACAGAAAGTGCACCAGGCTCCCCAGAACATGACCCTGCAGCGATTTCGCACACAGAATCTGGAATTGGAGACTCATTTGGGAACAGCAAGAGAAGGTTGCCACCCCTTCCTAATAAAAGTAGTAACCATGCAACAGAAAGCGGTGACTACAAACCTATAGAAGAAGAACTTGAAGCAATTTCTAGGACACACACAGGATTAGGTGATTCATTTGCTTCAAGCTATGGTGATCCAGCTAGTATATCTGCTGCAGCTACTCCATCAAATGCATCTTCGTCTTCCAATTACTCATCATATGATGGTTGCAATGGTGCCTCATCAATACACCCTTCAGCATGGGGCTTGGTAATTGTGACAGCAGGGTTTGGAGGTGAAATTAGGTGTTATCAGAATTTTGGCCTGCCTAGAAGGATGAGACAGACCAATATATTTTTGGGCCCTACATAA

Predicted protein sequences of Glyma18g38830

Limit To All Plant Sequences

>Glyma18g38830.2   sequence type=predicted peptide   gene model=Glyma18g38830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATMERRKTMTMNWDGLGDDDDDDHFFETYNRLSTAVPQDLADDDDGNFEDSRLSFASTISSTLTIKPRTSHFSANFTGKPNYEIWMAAPGSISERRRRLLCSMGLDENKELLQATSKAIARAMTKKFENNNDINNNNDNNNNKYAANSIAVRVEKQKPSSSPVFVLVRSRSEGDIDSFSMEKSRKEEIIGKVSKQRLTRTVTEVAQRRHARVENNRVVVKDAAAGDSLVHVDARVNRQVITPVMGVAGVSAFFLIKNLDTGKEFIVNEYGEDGTWNRLSDLQTGKQLTMEEFEKTVGHSAVVKEVMRRANVARGEKKLSSNSYISRSLRLSKRRGASLLRNIKGVASGFVGEREREAVVPPQAAEPAEPKGKNKWVRVRQSGKSQKELSALHLCQEFEAHEGCVWTIKFSLDGRYLASAGEDKVIHVWEVQEWEVMSLRPEEGNLTPIHPSLLSSMTKGKNGSRRGGAGAIPEYVHVPETVFTLSEKPYCSFTGHLDEVLDLSWSRSQLLLSSSMDKTVRLWDLETKSCLKFFAHNDYVTCVQFNPMDEDYFITGSLDAKVRMWNIPARLVVDWIDIHEMVTAVSYTPDGQGVLVGTQKGNCRTYSIEDYKLTQSDTIELRNKKKSQLKKVTGFQFAPNNPSEVLVTSADSRIRIVDGSQVVQKFKGFRNASSQMAASFTTSGRYIISASEDSQVYVWKHEETRNPSSGKARNLIVNQSHEHFPCKDVSVAIPWPCTIRGDPPPVPMQNPKKNSKRSQEDSAANSKRMLPPLPKKSNNHTTESAPGSPEHDPAAISHTESGIGDSFGNSKRRLPPLPNKSSNHATESGDYKPIEEELEAISRTHTGLGDSFASSYGDPASISAAATPSNASSSSNYSSYDGCNGASSIHPSAWGLVIVTAGFGGEIRCYQNFGLPRRMRQTNIFLGPT*

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