Glyma18g38680 - SoyBase

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Report for Sequence Feature Glyma18g38680

Feature Type:	gene_model
Chromosome:	Gm18
Start:	46326333
stop:	46331290
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38680

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G71110	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G12400.1); Has 173 Blast hits to 169 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink). \| chr1:26818244-26820852 FORWARD LENGTH=557	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1N2E4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2E4_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q25A63	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: H0306F03.12 protein n=3 Tax=Oryza sativa RepID=Q25A63_ORYSA	SoyBase	E_val: 2.00E-116	ISS

Expression Patterns of Glyma18g38680

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38680

Paralog	Evidence	Comments
Glyma08g47420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38680 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g177100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g38680

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma18g38680

Limit To All Plant Sequences

>Glyma18g38680.2   sequence type=transcript   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACAATACACAAACACCATCACCATGTTGGCTCAATCTCTATGTTAGATTAATGTTTTAAGAGTTTGGCTAATTGAGCTAAGAATCCAAAATGAAACAGTGAACTTTGTTATAGCAATGAAGTGTGTTCCCTCTACCGTGTTTCATTTGCTCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTGATTTCAGCTTTATCTCCAACTGGGTCAGCCAAACATTCCATAAAGTTTATCCTAGGGGGTCAGAATTTGGGTCCATGGAAGAATGGCGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTGCTAGCAGCAAACAGGACCAATAGGCCTGACATTCTACACGGATTTCGACGTTATCAAGGTGGTTGGGACATTGCAAATCGTCATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTAACCCTTGCTGTCCTATGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGCGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGTTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTTCTTTCTTTTGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTAGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTCACAGAGTATCTCGCGCTTGCCAAAACTATCGCTGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGATAAATTGAATGTGGATCTAAATTCTGCAGCAAATACACTTTCCGAGCAGACAAAAGAAAATTCTTTTAAAATACGAAAAGTATTCAATGCTGTGCGTCTAGCTTTGATTATGATGTCAGCAATGATGCTTCTACTGGCTCTAATTGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCGTATTTGTTATCAGTGGATGGCTATTGGTTGCAACCACATTCATTCTTTGTGGAGTGTTCACAATCCTTAATAATGCAATTTGTGACACATGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCAATATACTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAACATTGTTAGTATTGTCAACCGTTTCATCTATGACACTGCAGATGCAAGTCCAGCACAAGGAAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACGCCAGTGTACGCCTCAAGAAGTTTCCTCGGCCAATGCTTCATTGGTATACTTTTTCTATGTTCACTTTTGAAATTTGAGAGGGAAATGACTTGTGTGTAGATCAATCACTTTTTTTTAATGAAAATTGAACTA

>Glyma18g38680.3   sequence type=transcript   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATACAATACACAAACACCATCACCATGTTGGCTCAATCTCTATGTTAGATTAATGTTTTAAGAGTTTGGCTAATTGAGCTAAGAATCCAAAATGAAACAGTGAACTTTGTTATAGCAATGAAGTGTGTTCCCTCTACCGTGTTTCATTTGCTCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTGATTTCAGCTTTATCTCCAACTGGGTCAGCCAAACATTCCATAAAGTTTATCCTAGGGGGTCAGAATTTGGGTCCATGGAAGAATGGCGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTGCTAGCAGCAAACAGGACCAATAGGCCTGACATTCTACACGGATTTCGACGTTATCAAGGTGGTTGGGACATTGCAAATCGTCATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTAACCCTTGCTGTCCTATGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGCGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGTTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTTCTTTCTTTTGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTAGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTCACAGAGTATCTCGCGCTTGCCAAAACTATCGCTGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGATAAATTGAATGTGGATCTAAATTCTGCAGCAAATACACTTTCCGAGCAGACAAAAGAAAATTCTTTTAAAATACGAAAAGTATTCAATGCTGTGCGTCTAGCTTTGATTATGATGTCAGCAATGATGCTTCTACTGGCTCTAATTGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCGTATTTGTTATCAGTGGATGGCTATTGGTTGCAACCACATTCATTCTTTGTGGAGTGTTCACAATCCTTAATAATGCAATTTGTGACACATGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCAATATACTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAACATTGTTAGTATTGTCAACCGTTTCATCTATGACACTGCAGATGCAAGTCCAGCACAAGGAAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACGCCAGTGTTTGGAAGAGGTATGAATGTAAGACATCTGAATATGGTGTTTGCACCACTATTGGAAGGGTGACCCCAGAGATTTACTTGGAGTTAGTACAAGTAGTTAACGAAAGTTACGCATTGGAACATTATACTCCACTTTTACTTAGCCTTCAGAATTGCAATTTTGTGAGGCACACATTCAAAGAAATTACTTCACGTTACTGTCCTCCATTGAACCATTATCTTAAGGTTATCAATGTAGGATTGGGCCTAATTTCAATTGGTGTCTTGCTTTGTCTCGTTCTCTGGATACTTTATGCAAACCGCCCCCAAAAAGGAGGAAGCGTTTGTTAGGCTCTACATAGCTAAAAAACCAAAGAACAAATTTAGCAAGAACCCTAACAGAAATTCGTCTTTGTCAATAGCAATGAGTGAAGTATAGTTGTACAATGGAAAATTAATTGCAAAGAAAAAAAAAATCAAAAGTTGTGTTTCACTGGACCCCATAACGGGGAAAAACCAAGGTGAAGCGAAGCTACATGTTGATCGAATTAGAAGACAATATAGTCAAACCTAGTGTACTATACAAAATCATTCATAAAAGGAAGAAAACAATTTGTTTTCATTGAGTAAATAGTTGATGCAAT

Coding sequences of Glyma18g38680

Limit To All Plant Sequences

>Glyma18g38680.1   sequence type=CDS   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGTGTTCCCTCTACCGTGTTTCATTTGCTCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTGATTTCAGCTTTATCTCCAACTGGGTCAGCCAAACATTCCATAAAGTTTATCCTAGGGGGTCAGAATTTGGGTCCATGGAAGAATGGCGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTGCTAGCAGCAAACAGGACCAATAGGCCTGACATTCTACACGGATTTCGACGTTATCAAGGTGGTTGGGACATTGCAAATCGTCATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTAACCCTTGCTGTCCTATGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGCGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGTTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTTCTTTCTTTTGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTAGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTCACAGAGTATCTCGCGCTTGCCAAAACTATCGCTGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGATAAATTGAATGTGGATCTAAATTCTGCAGCAAATACACTTTCCGAGCAGACAAAAGAAAATTCTTTTAAAATACGAAAAGTATTCAATGCTGTGCGTCTAGCTTTGATTATGATGTCAGCAATGATGCTTCTACTGGCTCTAATTGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCGTATTTGTTATCAGTGGATGGCTATTGGTTGCAACCACATTCATTCTTTGTGGAGTGTTCACAATCCTTAATAATGCAATTTGTGACACATGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCAATATACTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAACATTGTTAGTATTGTCAACCGTTTCATCTATGACACTGCAGATGCAAGTCCAGCACAAGGAAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACGCCAGTGTACGCCTCAAGAAGTTTCCTCGGCCAATGCTTCATTGGTTTGGAAGAGGTATGAATGTAAGACATCTGAATATGGTGTTTGCACCACTATTGGAAGGGTGACCCCAGAGATTTACTTGGAGTTAGTACAAGTAGTTAACGAAAGTTACGCATTGGAACATTATACTCCACTTTTACTTAGCCTTCAGAATTGCAATTTTGTGAGGCACACATTCAAAGAAATTACTTCACGTTACTGTCCTCCATTGAACCATTATCTTAAGGTTATCAATGTAGGATTGGGCCTAATTTCAATTGGTGTCTTGCTTTGTCTCGTTCTCTGGATACTTTATGCAAACCGCCCCCAAAAAGGAGGAAGCGTTTGTTAG

>Glyma18g38680.2   sequence type=CDS   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGTGTTCCCTCTACCGTGTTTCATTTGCTCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTGATTTCAGCTTTATCTCCAACTGGGTCAGCCAAACATTCCATAAAGTTTATCCTAGGGGGTCAGAATTTGGGTCCATGGAAGAATGGCGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTGCTAGCAGCAAACAGGACCAATAGGCCTGACATTCTACACGGATTTCGACGTTATCAAGGTGGTTGGGACATTGCAAATCGTCATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTAACCCTTGCTGTCCTATGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGCGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGTTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTTCTTTCTTTTGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTAGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTCACAGAGTATCTCGCGCTTGCCAAAACTATCGCTGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGATAAATTGAATGTGGATCTAAATTCTGCAGCAAATACACTTTCCGAGCAGACAAAAGAAAATTCTTTTAAAATACGAAAAGTATTCAATGCTGTGCGTCTAGCTTTGATTATGATGTCAGCAATGATGCTTCTACTGGCTCTAATTGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCGTATTTGTTATCAGTGGATGGCTATTGGTTGCAACCACATTCATTCTTTGTGGAGTGTTCACAATCCTTAATAATGCAATTTGTGACACATGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCAATATACTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAACATTGTTAGTATTGTCAACCGTTTCATCTATGACACTGCAGATGCAAGTCCAGCACAAGGAAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACGCCAGTGTACGCCTCAAGAAGTTTCCTCGGCCAATGCTTCATTGGTATACTTTTTCTATGTTCACTTTTGA

>Glyma18g38680.3   sequence type=CDS   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGTGTGTTCCCTCTACCGTGTTTCATTTGCTCTTGTTCATCTTCCCCCTAGTACTCTCTGTTCACTTGATTTCAGCTTTATCTCCAACTGGGTCAGCCAAACATTCCATAAAGTTTATCCTAGGGGGTCAGAATTTGGGTCCATGGAAGAATGGCGTCACACAAGTAGCTCAAGCAGCACGTCCTAGAACTAAGGGTACTCTTGTGCTAGCAGCAAACAGGACCAATAGGCCTGACATTCTACACGGATTTCGACGTTATCAAGGTGGTTGGGACATTGCAAATCGTCATTACTGGGCCTCAGTTGGATTCACTGGTGTGGCTGGTTTAACCCTTGCTGTCCTATGGTTTATCTCATTTGGCTTGGCACTTGTGATTCATCTATGCTGCGGATGGGGAATTAACATCAAGGATAAAGGTTCAAATCGTTTGCAAAGAATTTGGTTTGTGTTGCTGTTGTTATTCACCTGTGTTGTAACGACTGGATGCATCGTTCTTTCTTTTGGGCAGGATAAATTCCATGGTGAGGCAGTGGATACCCTCCATTATGTAGTCAATCAGTCAGACTACACAGTGCAGACTCTAAGAAATGTCACAGAGTATCTCGCGCTTGCCAAAACTATCGCTGTGGCAGAGATGTTTCTTCCATCTAATATCATGGATGATATTGATAAATTGAATGTGGATCTAAATTCTGCAGCAAATACACTTTCCGAGCAGACAAAAGAAAATTCTTTTAAAATACGAAAAGTATTCAATGCTGTGCGTCTAGCTTTGATTATGATGTCAGCAATGATGCTTCTACTGGCTCTAATTGGGTTAATCCTGTCTATCCTTGGATATCAACACGCAATCCTCGTATTTGTTATCAGTGGATGGCTATTGGTTGCAACCACATTCATTCTTTGTGGAGTGTTCACAATCCTTAATAATGCAATTTGTGACACATGCATGGCCATGGGAGAATGGGTGGAGAATCCGCATGCTGAATCTGCTCTTAGCAATATACTTCCATGTGTTGATCAGAGAACCACAAACAAGACACTTTTTCAGAGTAAACAAGTTGTTACCAACATTGTTAGTATTGTCAACCGTTTCATCTATGACACTGCAGATGCAAGTCCAGCACAAGGAAGTATGAATTATTACAATCAATCTGGACCTGCAATGCCACCTTTGTGCTATCCCTTTGACTCTCAGTTTCGAGAACGCCAGTGTTTGGAAGAGGTATGA

Predicted protein sequences of Glyma18g38680

Limit To All Plant Sequences

>Glyma18g38680.1   sequence type=predicted peptide   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKCVPSTVFHLLLFIFPLVLSVHLISALSPTGSAKHSIKFILGGQNLGPWKNGVTQVAQAARPRTKGTLVLAANRTNRPDILHGFRRYQGGWDIANRHYWASVGFTGVAGLTLAVLWFISFGLALVIHLCCGWGINIKDKGSNRLQRIWFVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQSDYTVQTLRNVTEYLALAKTIAVAEMFLPSNIMDDIDKLNVDLNSAANTLSEQTKENSFKIRKVFNAVRLALIMMSAMMLLLALIGLILSILGYQHAILVFVISGWLLVATTFILCGVFTILNNAICDTCMAMGEWVENPHAESALSNILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIYDTADASPAQGSMNYYNQSGPAMPPLCYPFDSQFRERQCTPQEVSSANASLVWKRYECKTSEYGVCTTIGRVTPEIYLELVQVVNESYALEHYTPLLLSLQNCNFVRHTFKEITSRYCPPLNHYLKVINVGLGLISIGVLLCLVLWILYANRPQKGGSVC*

>Glyma18g38680.2   sequence type=predicted peptide   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKCVPSTVFHLLLFIFPLVLSVHLISALSPTGSAKHSIKFILGGQNLGPWKNGVTQVAQAARPRTKGTLVLAANRTNRPDILHGFRRYQGGWDIANRHYWASVGFTGVAGLTLAVLWFISFGLALVIHLCCGWGINIKDKGSNRLQRIWFVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQSDYTVQTLRNVTEYLALAKTIAVAEMFLPSNIMDDIDKLNVDLNSAANTLSEQTKENSFKIRKVFNAVRLALIMMSAMMLLLALIGLILSILGYQHAILVFVISGWLLVATTFILCGVFTILNNAICDTCMAMGEWVENPHAESALSNILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIYDTADASPAQGSMNYYNQSGPAMPPLCYPFDSQFRERQCTPQEVSSANASLVYFFYVHF*

>Glyma18g38680.3   sequence type=predicted peptide   gene model=Glyma18g38680   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKCVPSTVFHLLLFIFPLVLSVHLISALSPTGSAKHSIKFILGGQNLGPWKNGVTQVAQAARPRTKGTLVLAANRTNRPDILHGFRRYQGGWDIANRHYWASVGFTGVAGLTLAVLWFISFGLALVIHLCCGWGINIKDKGSNRLQRIWFVLLLLFTCVVTTGCIVLSFGQDKFHGEAVDTLHYVVNQSDYTVQTLRNVTEYLALAKTIAVAEMFLPSNIMDDIDKLNVDLNSAANTLSEQTKENSFKIRKVFNAVRLALIMMSAMMLLLALIGLILSILGYQHAILVFVISGWLLVATTFILCGVFTILNNAICDTCMAMGEWVENPHAESALSNILPCVDQRTTNKTLFQSKQVVTNIVSIVNRFIYDTADASPAQGSMNYYNQSGPAMPPLCYPFDSQFRERQCLEEV*

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