SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g38670

Feature Type:gene_model
Chromosome:Gm18
Start:46319006
stop:46324890
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38670
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G37990AT Annotation by Michelle Graham. TAIR10: elicitor-activated gene 3-2 | chr4:17855964-17857388 FORWARD LENGTH=359 SoyBaseE_val: 3.00E-164ISS
GO:0006865GO-bp Annotation by Michelle Graham. GO Biological Process: amino acid transport SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009626GO-bp Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response SoyBaseN/AISS
GO:0009809GO-bp Annotation by Michelle Graham. GO Biological Process: lignin biosynthetic process SoyBaseN/AISS
GO:0010583GO-bp Annotation by Michelle Graham. GO Biological Process: response to cyclopentenone SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0045551GO-mf Annotation by Michelle Graham. GO Molecular Function: cinnamyl-alcohol dehydrogenase activity SoyBaseN/AISS
GO:0047681GO-mf Annotation by Michelle Graham. GO Molecular Function: aryl-alcohol dehydrogenase (NADP+) activity SoyBaseN/AISS
KOG0023 KOG Alcohol dehydrogenase, class V JGI ISS
PTHR11695Panther ALCOHOL DEHYDROGENASE RELATED JGI ISS
PTHR11695:SF285Panther QUINONE OXIDOREDUCTASE-RELATED JGI ISS
PF00107PFAM Zinc-binding dehydrogenase JGI ISS
PF08240PFAM Alcohol dehydrogenase GroES-like domain JGI ISS
UniRef100_B9IIG5UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cinnamyl alcohol dehydrogenase-like protein n=1 Tax=Populus trichocarpa RepID=B9IIG5_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI00018C6E62UniRef Annotation by Michelle Graham. Best UniRef hit: UPI00018C6E62 related cluster n=1 Tax=unknown RepID=UPI00018C6E62 SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g38670
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38670 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g177000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38670
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38670
>Glyma18g38670.1   sequence type=CDS   gene model=Glyma18g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGTGCAACCTGAAATTGAGCATCCCAGGAAGGCCTATGGATGGGCAGCTAGGGATACATCTGGTGTTCTCTCCCCTTTTTGGTTCTCTAGAAGGAAAACAGGGGAGAAAGACGTGACATTTAAAGTGTTGTATTGTGGAGTATGCCACTCGGACCTTCACAAGTTGAAAAATGAATGGAGTGATTCCATCTATCCCCTTGTCCCTGGCCGTGAGATTGTTGGAGAAGTGACAGAGGTGGGAAGCAAAGTAGACAAGTTCAAGGTTGGAGACAAAGTAGCTGCGGGATGCTTGGTTGGGTCCTGCCACTCATGCCAAAACTGTGTCAACAATCTTGAGAATTATTGCCAACAAGTGATTCCCACATATGGTGCAAAGTATGTGGATGGCACCATCACATATGGGGGATTCTCAGACTTCATGGTAGCAGATGAGCACTTTGTTGTCAACATTCCAAGTGCCCTACCTCTTGATGCTGCAGCTCCTCTCCTTTGTGCAGGGATCACAGTGTATGGTCCTTTGAGATATTTTGGGCTTGACAAACCTGGCATGCATCTGGGTGTGGTTGGTCTTGGTGGACTAGGCCATCTGGCTGTCAAATTTGCAAAAGCCCTTGGCTTGAAGGTCACTGTCATCAGTACCTCTCCTAAAAAGAAAAATGAAGCCATACAACATCTTGGAGCTGATTTTTTTGTGGTCAGTAGAGACCAAGATCAAATGCAGGCTGCAATGTGCACCTTGGATGGTATAATTGATACTGTTTCTGCAGTCCACCCTCTCATGCCCTTGATTGATCTATTGAAGTCTCATGGGAAACTAGTAGCTGTTGGGGCACCGGAGAAACCTCTGGAATTGCTTCTCCCACCTTTAATTTTGGGGAGAAAAAGTATAGCGGGTAGTTACATTGGAGGAATCAAGGAGACACAAGAAATGATTAATTTCGCTGCTGAACACAATGTTAGACCGGAAATTGAAGTAATTCCTATGGATTATGTGAACACAGCAATGGAGCGTCTCCAGAAAGCCGACGTTAAATATCGATTTGTGATTGACATTGGAAACACATTGAAGCCACACTATTAG
Predicted protein sequences of Glyma18g38670
>Glyma18g38670.1   sequence type=predicted peptide   gene model=Glyma18g38670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVQPEIEHPRKAYGWAARDTSGVLSPFWFSRRKTGEKDVTFKVLYCGVCHSDLHKLKNEWSDSIYPLVPGREIVGEVTEVGSKVDKFKVGDKVAAGCLVGSCHSCQNCVNNLENYCQQVIPTYGAKYVDGTITYGGFSDFMVADEHFVVNIPSALPLDAAAPLLCAGITVYGPLRYFGLDKPGMHLGVVGLGGLGHLAVKFAKALGLKVTVISTSPKKKNEAIQHLGADFFVVSRDQDQMQAAMCTLDGIIDTVSAVHPLMPLIDLLKSHGKLVAVGAPEKPLELLLPPLILGRKSIAGSYIGGIKETQEMINFAAEHNVRPEIEVIPMDYVNTAMERLQKADVKYRFVIDIGNTLKPHY*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo