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Report for Sequence Feature Glyma18g38650

Feature Type:gene_model
Chromosome:Gm18
Start:46303750
stop:46304342
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38650
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G62670AT Annotation by Michelle Graham. TAIR10: H(+)-ATPase 11 | chr5:25159495-25164957 FORWARD LENGTH=956 SoyBaseE_val: 5.00E-86ISS
GO:0006200GO-bp Annotation by Michelle Graham. GO Biological Process: ATP catabolic process SoyBaseN/AISS
GO:0006754GO-bp Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process SoyBaseN/AISS
GO:0006812GO-bp Annotation by Michelle Graham. GO Biological Process: cation transport SoyBaseN/AISS
GO:0008152GO-bp Annotation by Michelle Graham. GO Biological Process: metabolic process SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0016021GO-cc Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0005524GO-mf Annotation by Michelle Graham. GO Molecular Function: ATP binding SoyBaseN/AISS
GO:0015662GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism SoyBaseN/AISS
GO:0016887GO-mf Annotation by Michelle Graham. GO Molecular Function: ATPase activity SoyBaseN/AISS
GO:0046872GO-mf Annotation by Michelle Graham. GO Molecular Function: metal ion binding SoyBaseN/AISS
PTHR24093Panther FAMILY NOT NAMED JGI ISS
PTHR24093:SF61Panther SUBFAMILY NOT NAMED JGI ISS
PF00122PFAM E1-E2 ATPase JGI ISS
UniRef100_Q9M460UniRef Annotation by Michelle Graham. Most informative UniRef hit: Plasma membrane H+ ATPase n=1 Tax=Prunus persica RepID=Q9M460_PRUPE SoyBaseE_val: 3.00E-84ISS
UniRef100_UPI0002339456UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339456 related cluster n=1 Tax=unknown RepID=UPI0002339456 SoyBaseE_val: 5.00E-87ISS

Expression Patterns of Glyma18g38650
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38650 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g38650
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38650
>Glyma18g38650.1   sequence type=CDS   gene model=Glyma18g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTTGACTGCAATTGGAAACTTCTGCATATGTTCAATTGTTGTGGGGATGGTTATTGAGATTATTGTTATGTATCCCATTCAAGATCGAGAATATCGCCCGGGAATCGATAACCTTCTTGTGCTTCTTATTGGTGGAATTCCAATTGCCATGCCCACTGTCCTCTCGGTGACTATGGCCATTGGTTCTCACAGGCTATCACAGCTGGGGGCTATCACAAAGAGAATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACCCTAACACTAAATAAGCTTACTGTTGACAAAAATCTTATAGAGGTTTTTGCAAAAGGAGTGGATGCGGATACTGTTGTTTTGATGGCAGCTCAAGCTTCAAGACTTGAGAATCAAGATGCAATAGACACTGCCATAGTTGGA
Predicted protein sequences of Glyma18g38650
>Glyma18g38650.1   sequence type=predicted peptide   gene model=Glyma18g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VLTAIGNFCICSIVVGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQLGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAAQASRLENQDAIDTAIVG






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