Glyma18g38650 - SoyBase

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Report for Sequence Feature Glyma18g38650

Feature Type:	gene_model
Chromosome:	Gm18
Start:	46303750
stop:	46304342
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G62670	AT	Annotation by Michelle Graham. TAIR10: H(+)-ATPase 11 \| chr5:25159495-25164957 FORWARD LENGTH=956	SoyBase	E_val: 5.00E-86	ISS
GO:0006200	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP catabolic process	SoyBase	N/A	ISS
GO:0006754	GO-bp	Annotation by Michelle Graham. GO Biological Process: ATP biosynthetic process	SoyBase	N/A	ISS
GO:0006812	GO-bp	Annotation by Michelle Graham. GO Biological Process: cation transport	SoyBase	N/A	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0015662	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0046872	GO-mf	Annotation by Michelle Graham. GO Molecular Function: metal ion binding	SoyBase	N/A	ISS
PTHR24093	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24093:SF61	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00122	PFAM	E1-E2 ATPase	JGI		ISS
UniRef100_Q9M460	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Plasma membrane H+ ATPase n=1 Tax=Prunus persica RepID=Q9M460_PRUPE	SoyBase	E_val: 3.00E-84	ISS
UniRef100_UPI0002339456	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339456 related cluster n=1 Tax=unknown RepID=UPI0002339456	SoyBase	E_val: 5.00E-87	ISS

Expression Patterns of Glyma18g38650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38650 not represented in the dataset	Glyma18g38650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g38650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38650

Limit To All Plant Sequences

>Glyma18g38650.1   sequence type=CDS   gene model=Glyma18g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTGTTGACTGCAATTGGAAACTTCTGCATATGTTCAATTGTTGTGGGGATGGTTATTGAGATTATTGTTATGTATCCCATTCAAGATCGAGAATATCGCCCGGGAATCGATAACCTTCTTGTGCTTCTTATTGGTGGAATTCCAATTGCCATGCCCACTGTCCTCTCGGTGACTATGGCCATTGGTTCTCACAGGCTATCACAGCTGGGGGCTATCACAAAGAGAATGACAGCTATTGAAGAGATGGCAGGCATGGATGTGCTTTGCAGTGATAAGACTGGGACCCTAACACTAAATAAGCTTACTGTTGACAAAAATCTTATAGAGGTTTTTGCAAAAGGAGTGGATGCGGATACTGTTGTTTTGATGGCAGCTCAAGCTTCAAGACTTGAGAATCAAGATGCAATAGACACTGCCATAGTTGGA

Predicted protein sequences of Glyma18g38650

Limit To All Plant Sequences

>Glyma18g38650.1   sequence type=predicted peptide   gene model=Glyma18g38650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VLTAIGNFCICSIVVGMVIEIIVMYPIQDREYRPGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQLGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKNLIEVFAKGVDADTVVLMAAQASRLENQDAIDTAIVG

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