Glyma18g38610 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma18g38610

Feature Type:	gene_model
Chromosome:	Gm18
Start:	46259177
stop:	46262878
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G28840	AT	Annotation by Michelle Graham. TAIR10: XB3 ortholog 1 in Arabidopsis thaliana \| chr2:12378542-12380474 FORWARD LENGTH=456	SoyBase	E_val: 0	ISS
GO:0051049	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transport	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG4412	KOG	26S proteasome regulatory complex, subunit PSMD10	JGI		ISS
PTHR24158	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24158:SF306	Panther		JGI		ISS
PF00023	PFAM	Ankyrin repeat	JGI		ISS
UniRef100_G8Z251	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hop-interacting protein THI012 n=1 Tax=Solanum lycopersicum RepID=G8Z251_SOLLC	SoyBase	E_val: 0	ISS
UniRef100_UPI000233EE3E	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233EE3E related cluster n=1 Tax=unknown RepID=UPI000233EE3E	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g38610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38610

Paralog	Evidence	Comments
Glyma08g47310	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g176600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g38610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38610

Limit To All Plant Sequences

>Glyma18g38610.1   sequence type=CDS   gene model=Glyma18g38610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTCAGACGCTGAGTTGCGTGCAACAGCACGAGGACCATGGTGTGCTCTTCCCTGCACTTGCAAGTGGAGAATTGGAGGTTGTTGAGGCCATGGTGGAGGAAGACCCCACTGTGTTGGAACACACCATTGGCTGTGACAGGCTTTCTCCTCTGCATGTCGCTGCTGCCAATGGTCGGATCGAGGTTCTTTCCATGTTGTTGGATAGGTCTTTCAATGTTGACGTATTGAATCGACATAAACAGACCCCGTTGATGTTGGCTGTGATGCATGGAAAGACTGGTTGTGTTGAGAAGCTTATTCATGCCGGAGCGAATATATTGATGTTTGATTCTATACGTCGAAGAACTTGCTTGCACTACGCTGCTTATTATGGGCATATAGACTGCCTTAAGGCCATTCTTTCTGCTGCTCATTCCACACCTGTTGCTGATTCTTGGGGATTTGCAAGATTTGTCAACATAAGAGATGGAAACGGTGCCACCCCTCTGCATCTTGCAGCTCGCCATAGACGGTCGGAATGTCTTCATGCCCTTTTAGACAATGGTGCTCTTGTTTGTGCTTCAACCGGTGGATATGGTTACCCTGGAAGCACGCCACTTCATATGGCTGCACGTGGTGGTTCTTTGGACTGTGTCCGGATGCTGCTTGCTTGGGGAGCGGATAGACTTCAATTAGATTCTTCTGGGAAAATACCGTTCTCAGTTGCTCTGAAGCACAAGCATAAGGCATGTGCTGCCCTGCTGGATCCGTCGTCAGCAGCACCGCTTGTTTGGCCATCCCCATTAAAGTTCATCAGTGAGCTCAATCAGGAAGCAAAAGCCTTACTGGAAAAGGCCTTACTAGAAGCTAACAGGGAGAGGGAGAAGACCATACTAAAGGAGACTGACATGCCTCCATCCCCACTGCATTCAGAGAGTGAAGATGATAACATTGCCTCTGAGGCTAGCGATATGGAGTTATGTTGCATATGCTTTGACCAAGCATGCACAATTGAGGTCAGACCCTGTGGCCATCAAATGTGTGCTCATTGCACCCTAGCACTATGCTGTCACAAAAAGCCTGATCCTGCTACTGCCGGCCTTTCTGGACCAGTTTGTCCATTTTGCCGTGGCACCATTCTTCAATTACTGGTTGCTAAGATTAACAAAATCAGTGATACAGAAGTGGAATCTGGCCCTATGAAGCCAAGGAGATCACGGAAATCAAATTTCAGTGAAGGAAGCAGCAGCTTCAAGAGCTTGTCGGCCATGGGCTCATTTGGAAGGATTGCTGGCCGCAATTCCGGGAAGATTACAGATGAAAAGCAATGGGAGGTTTCTTGA

Predicted protein sequences of Glyma18g38610

Limit To All Plant Sequences

>Glyma18g38610.1   sequence type=predicted peptide   gene model=Glyma18g38610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGQTLSCVQQHEDHGVLFPALASGELEVVEAMVEEDPTVLEHTIGCDRLSPLHVAAANGRIEVLSMLLDRSFNVDVLNRHKQTPLMLAVMHGKTGCVEKLIHAGANILMFDSIRRRTCLHYAAYYGHIDCLKAILSAAHSTPVADSWGFARFVNIRDGNGATPLHLAARHRRSECLHALLDNGALVCASTGGYGYPGSTPLHMAARGGSLDCVRMLLAWGADRLQLDSSGKIPFSVALKHKHKACAALLDPSSAAPLVWPSPLKFISELNQEAKALLEKALLEANREREKTILKETDMPPSPLHSESEDDNIASEASDMELCCICFDQACTIEVRPCGHQMCAHCTLALCCHKKPDPATAGLSGPVCPFCRGTILQLLVAKINKISDTEVESGPMKPRRSRKSNFSEGSSSFKSLSAMGSFGRIAGRNSGKITDEKQWEVS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain