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Report for Sequence Feature Glyma18g38530

Feature Type:gene_model
Chromosome:Gm18
Start:46075416
stop:46077097
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38530
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G37580AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr2:15764745-15765452 FORWARD LENGTH=235 SoyBaseE_val: 2.00E-28ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
PTHR22764Panther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW DOMAIN-BINDING PROTEIN 2). JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_G7JUJ7UniRef Annotation by Michelle Graham. Most informative UniRef hit: RING-H2 finger protein ATL1N n=1 Tax=Medicago truncatula RepID=G7JUJ7_MEDTR SoyBaseE_val: 3.00E-54ISS
UniRef100_I1N2D9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1N2D9_SOYBN SoyBaseE_val: 3.00E-162ISS

Expression Patterns of Glyma18g38530
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38530 not represented in the dataset
Glyma18g38530 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38530 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g176200 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38530
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38530
>Glyma18g38530.1   sequence type=CDS   gene model=Glyma18g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATTATTAATATTAATATTATTAATAATTATAATCCCTTCACCCTCTTTCTCTGTCACAATGCAAAACTCACCCACCGTCCTCGCTGTTCCGCCGCCGCGCCCCGCCACTCAAATAAACGTCATCCCCATCCCACCGTCCTTCGACGGAGCTCCAAACTCCGTCTTCCCGAGCACCTTCCTACCCTTCCCGCCGCCGCCGCCGTTCGCCGGACCTCCCAGCTCCGTCGATCTCTCCCCTCTCGAATTCCTCCTCGCGCTCCTCGCCGTCGTCACCATCCCGGCCCTAATTTACACTTTCATCTTCGCCTTCGGCTGCCCGTCGCGCCGCCGCCGCCGGGAACCCTCCTACGGCGAGCCCTCCGTAGCGTCGGAGGTGTCCCACCACCAGGAATTCGAAATCGCCGCCGTCGCCGACACCGAAGTGAAGTACCGGAAGGAGGCGCACGCGAAGGAAATCGGCGGCGAGTGCCCGGTGTGTTTGTCGGTGTTCGCCAACGGCGAAGAAGTCCGGCAGCTGAGCGCGTGCAAACACTCGTTCCACGCTTCTTGCATTGACTTGTGGCTCAGCAACCACTCCAATTGCCCGATTTGTCGTGCTACCATCGCCGTCACCACCACCAAAACCGGAGACGGTGACTCGCACCTGAGTCACCGTGAGCCCGATGCGACAAATTTGGTTTGA
Predicted protein sequences of Glyma18g38530
>Glyma18g38530.1   sequence type=predicted peptide   gene model=Glyma18g38530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTLLILILLIIIIPSPSFSVTMQNSPTVLAVPPPRPATQINVIPIPPSFDGAPNSVFPSTFLPFPPPPPFAGPPSSVDLSPLEFLLALLAVVTIPALIYTFIFAFGCPSRRRRREPSYGEPSVASEVSHHQEFEIAAVADTEVKYRKEAHAKEIGGECPVCLSVFANGEEVRQLSACKHSFHASCIDLWLSNHSNCPICRATIAVTTTKTGDGDSHLSHREPDATNLV*






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