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Report for Sequence Feature Glyma18g38490

Feature Type:gene_model
Chromosome:Gm18
Start:46010446
stop:46015050
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38490
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT3G24650AT Annotation by Michelle Graham. TAIR10: AP2/B3-like transcriptional factor family protein | chr3:8997911-9000780 FORWARD LENGTH=720 SoyBaseE_val: 3.00E-163ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009657GO-bp Annotation by Michelle Graham. GO Biological Process: plastid organization SoyBaseN/AISS
GO:0009686GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellin biosynthetic process SoyBaseN/AISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0009740GO-bp Annotation by Michelle Graham. GO Biological Process: gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0009790GO-bp Annotation by Michelle Graham. GO Biological Process: embryo development SoyBaseN/AISS
GO:0016114GO-bp Annotation by Michelle Graham. GO Biological Process: terpenoid biosynthetic process SoyBaseN/AISS
GO:0031930GO-bp Annotation by Michelle Graham. GO Biological Process: mitochondria-nucleus signaling pathway SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048825GO-bp Annotation by Michelle Graham. GO Biological Process: cotyledon development SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
PF02362PFAM B3 DNA binding domain JGI ISS
UniRef100_Q68AN0UniRef Annotation by Michelle Graham. Most informative UniRef hit: ABI-3 homolog n=1 Tax=Psophocarpus tetragonolobus RepID=Q68AN0_PSOTE SoyBaseE_val: 0ISS
UniRef100_UPI000233EE3CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233EE3C related cluster n=1 Tax=unknown RepID=UPI000233EE3C SoyBaseE_val: 0ISS

Expression Patterns of Glyma18g38490
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38490
ParalogEvidenceComments
Glyma08g47240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38490 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.18g176100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma18g38490
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38490
>Glyma18g38490.2   sequence type=CDS   gene model=Glyma18g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAACGAACACACTTTGGCGGTTGCTGAGAGAGAGATGTGGCTGAACAGTGACCAAGACGAGTTCCTAGGAGTCAATGATGCTTCCATGTTCTACGCCGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCATCATCATCATCTTCTTCTTCAGCACTACCATTTCCTGTGAAGACCATGACATGTTCCACCAGAACCACAACAACAACCACCACTTCCTCTTCTTCCTCTTCCTCATCCTGGGCCGTGTTGAAGTCAGATGCTGAGGAAGATGCAGAGAAAAATCATTGCAACCGCTACATGCATGACCAACTTGATGCAACTTTGTCTTCCACTGCTTCCATGGAGGTTTCTCAACAGAAAAACCTCGATCCTGGGCTTGGTGGCCCTGTTGGTGAGTGCATGGATGATGTTATGGACACTTTTGGGTACATGGAGCTTTTGGAGGCCAATGATTTCTTCGACCCTGCCTCTATCTTTCAGAACGAGGATAACGAAAACCCTTTAGTAGATTTCGGCACACTGGAGCAGCATGTGCCGTTGCATGATGAGCAACATGAAATGTTGCATCATCAGCAAGGGAGAACAGAAGAGGTTGATCATCAGGTTCCTGTGTGTGAAGAGATCCAAGGAGATGAAGAAGGTGGTGATGGTGTTGGAGTAGACGATGAGATGAGTAATGTGTTCTTGGAGTGGCTCAAGTCTAACAAGGATAGTGTCTCTGCTAATGATTTGAGGAATGTGAAGCTCAAGAAGGCGACGATTGAAAGTGCTGCGAGGCGGCTAGGGGGAGGAAAAGAAGCCATGAAGCAGTTGCTGAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAGCGGCGTAAGGAGAATAACGGTAGCAGTATTAGCAGTGCACTTCAGGCACAGTTTCCGGATCCTAGTGTCCAGAACAACCAGAATACACAAAGTGGTTCATTTTCACCTGAATCAAACGCTTGTTTCAACAACCAGACACCGTGGTTGAGTCCTCAAACTTTTGCAACAGATCAGGCTCCTCTCATGGTGCCTCCACAGCAATTTCAACAACCCATGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTGCTGCTTCAAATAACATCACAACTTCTCATAATCATAACAGCAACAACCCCTATCAACCTGGTGCAGAACAATATCACATGTTGGAGTCGGCACATTCATGGCCTCATTCTCAGTTCAATGTTGCTTGTCACTATAGCCAGTCTTTTGGGGACAATAATGGTATTTTCCCACATGGGGGTTTTGGTGGTGGCTATGGCAATAACCAGTACCCTTACCAGTTTTTTCATGGCCCTGGTGATACGTTGATGAGGTTGGGGCCCTCGGCGACGAAGGAAGCGAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTCTGTCTCATCACAGGCATCATAATGGTAATTACCAGAATTCAGGGTCAGACCCACATGCAAGATTGGGGGGTGGTGATAATTGCACCACTGGTTTGGCTGCACCTCATCATGCAAATCCTACAGCCAATTGGATGTACTGGCAGGCTATGACGGGCGGTGCGGCGGGTCCTTTGGCTCCCCCGGCCGAGCCGCCAGCTGTGGACCGGTCTGCCTTGCAGACACAGAATTGTCATCAGAGTCGAGTTGCATCAGATAGGAGACAGGGTTGGAAGCCTGAGAAAAACTTGAGGTTCCTTCTGCAGAAGGTGTTGAAACAAAGCGATGTGGGAAGTTTGGGGAGAATAGTTTTGCCAAAAAAAGAGGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCGAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGACTTTGTGAGAGCCAATGGACTCCAAGAGGGAGATTTCATAGTGATATACTCAGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAGAAAGTAGGAAAATCGCAGAAAAACCAGCATGGGACAGGGACAAATGCATCAACTACAGCTTGTACTGCTGCTAATAATGGCACGCCATCGTCACCGAAAACCAAAGCTGAAAAAAGTAGTAAATTAATATAA
Predicted protein sequences of Glyma18g38490
>Glyma18g38490.2   sequence type=predicted peptide   gene model=Glyma18g38490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENEHTLAVAEREMWLNSDQDEFLGVNDASMFYADFPPLPDFPCMSSSSSSSSALPFPVKTMTCSTRTTTTTTTSSSSSSSSWAVLKSDAEEDAEKNHCNRYMHDQLDATLSSTASMEVSQQKNLDPGLGGPVGECMDDVMDTFGYMELLEANDFFDPASIFQNEDNENPLVDFGTLEQHVPLHDEQHEMLHHQQGRTEEVDHQVPVCEEIQGDEEGGDGVGVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAARRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENNGSSISSALQAQFPDPSVQNNQNTQSGSFSPESNACFNNQTPWLSPQTFATDQAPLMVPPQQFQQPMVGYVGDPYTSGAASNNITTSHNHNSNNPYQPGAEQYHMLESAHSWPHSQFNVACHYSQSFGDNNGIFPHGGFGGGYGNNQYPYQFFHGPGDTLMRLGPSATKEARKKRMARQRRFLSHHRHHNGNYQNSGSDPHARLGGGDNCTTGLAAPHHANPTANWMYWQAMTGGAAGPLAPPAEPPAVDRSALQTQNCHQSRVASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKVGKSQKNQHGTGTNASTTACTAANNGTPSSPKTKAEKSSKLI*






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