Glyma18g38470 - SoyBase

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Report for Sequence Feature Glyma18g38470

Feature Type:	gene_model
Chromosome:	Gm18
Start:	45983777
stop:	45987919
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G48940	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat transmembrane protein kinase family protein \| chr5:19839785-19843744 FORWARD LENGTH=1135	SoyBase	E_val: 0	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF784	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_B9S566	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor protein kinase CLAVATA1, putative n=1 Tax=Ricinus communis RepID=B9S566_RICCO	SoyBase	E_val: 0	ISS
UniRef100_I1N2D6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2D6_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g38470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38470

Paralog	Evidence	Comments
Glyma08g47220	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g176000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g38470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38470

Limit To All Plant Sequences

>Glyma18g38470.1   sequence type=CDS   gene model=Glyma18g38470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAACAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCACCACCTTCTCCATGTTCTTCTCTTTACACTTCTTGTTCCTATTTCCTTTGCTGCAAATGATGAAGTTAGTGCATTGGTTTCATGGATGCACAGCTCCTCCAATACAGTTCCTTTAGCTTTTTCTAGCTGGAACCCTTTGGATTCCAATCCTTGCAATTGGTCCTACATCAAATGCTCTTCAGCAAGCTTTGTCACTGAGATAACCATTCAAAATGTTGAGTTAGCCCTTCCCTTCCCTTCAAAAATTTCATCCTTTCCTTTCCTTCAAAAATTGGTCATTTCAGGGGCTAACCTCACTGGAGTTATCTCAATTGATATTGGAAACTGCCTTGAGCTTGTAGTCCTTGACCTTAGCTCAAATAGTCTTGTGGGGGGCATTCCTTCAAGTATTGGGAGGCTCAGAAACCTGCAAAACTTGAGCTTGAACTCTAACCATCTCACTGGACAAATCCCAAGTGAGATTGGTGATTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAATCTTAATGGGGATCTTCCTGTGGAACTAGGAAAGCTGTCTAATCTGGAGGTTATAAGAGCAGGAGGGAACAGTGGCATTGCAGGGAATATTCCAGATGAACTTGGCGATTGCAAGAATTTGTCAGTGTTAGGTCTGGCTGACACTAAAATTTCTGGCTCATTGCCTGCTTCACTGGGTAAGTTAAGCATGCTTCAGACCTTGTCTATTTATAGTACTATGCTCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGCTCAGAGCTTGTGAACTTGTTTTTGTATGAGAATGGTCTCTCTGGCTCCCTGCCAAGAGAGATTGGTAAGCTTCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAATAGTTTTGTTGGGGGCATTCCTGAGGAAATTGGCAACTGTAGAAGCTTGAAGATTCTTGATGTCTCCTTGAATTCTTTCTCTGGTGGAATACCTCAGAGTTTGGGGAAGCTCTCAAATCTTGAGGAGCTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCAAAAGCTCTTTCCAATCTCACAAACCTCATACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCGATTCCACCAGAGCTTGGAAGCTTGACAAAGCTAACAATGTTTTTTGCTTGGCAGAACAAACTTGAAGGTGGCATTCCATCAACATTGGAAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAGCTTCAAAATTTGACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCCATCCCTCCTGAGATTGGAAAATGCAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCGAAAGAAATCGGCTTCCTCAATAGCCTCAATTTCCTTGATCTGTCTGAGAATCACCTTACTGGGTCAGTACCACTTGAGATAGGAAACTGTAAAGAATTGCAAATGCTGAATCTAAGTAATAACTCCCTTTCTGGTGCTTTGCCCAGTTATTTGTCTTCTCTCACAAGGCTGGACGTATTGGATCTTTCCATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCCTAAGCAAAAACTCTTTCTCTGGGCCAATTCCCTCCTCACTTGGGCAATGTTCAGGTCTTCAACTGCTAGACCTTAGCAGCAACAAATTCTCAGGGACCATCCCACCAGAACTGCTTCAAATTGAAGCACTTGATATTTCTCTAAATTTTAGTCATAATGCATTATCTGGAGTGGTCCCACCAGAGATTTCTTCTCTGAACAAACTGTCAGTTCTAGACCTTTCACACAACAACCTTGAAGGTGACTTGATGGCTTTTTCGGGGCTCGAGAATCTTGTTTCTCTGAACATTTCCTTCAACAAGTTCACAGGTTATCTGCCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCAAATGGTCATGATTCATGTTTTGTTAGCAATGCAGCAATGACGAAAATGATAAATGGCACTAATTCGAAGAGGTCAGAGATAATCAAACTGGCCATTGGATTGCTCAGTGCCTTGGTTGTTGCAATGGCAATCTTCGGAGCTGTTAAAGTCTTTCGAGCAAGGAAAATGATTCAAGCAGACAATGATTCTGAGGTGGGAGGGGATTCATGGCCTTGGCAGTTCACCCCATTCCAAAAGGTAAATTTCTCTGTGGAACAAGTGTTCAAGTGTTTGGTGGAATCCAATGTGATAGGAAAGGGGTGTTCAGGGATTGTTTATCGCGCTGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGGCTATGGCCAACAACATCGGCTGCAAGATATGATAGTCAAAGTGACAAGTTAGCAGTCAATGGAGGGGTACGCGATTCCTTTTCAGCCGAGGTAAAAACTCTTGGTTCGATCCGCCACAAGAACATTGTAAGATTCTTGGGTTGCTGTTGGAACAGAAACACAAGATTGCTTATGTATGATTACATGCCAAATGGGAGTCTAGGAAGTCTGCTTCATGAACAAAGTGGAAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCTCAAGGTGTGGCTTATTTGCACCATGACTGTGCTCCTCCCATTGTTCACAGGGATATTAAGGCCAACAATATCCTCATAGGCCCTGAATTTGAACCATACATTGCTGATTTTGGGCTTGCAAAACTTGTTGATGATGGAGATTTTGCTCGATCTTCTAGCACACTAGCTGGTTCCTATGGTTACATTGCTCCTGAGTATGGATACATGATGAAGATAACAGAGAAAAGTGATGTTTATAGCTATGGTATTGTTGTATTAGAGGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCACATTGTTGATTGGGTAAGACATAAAAGAGGTGGAGTTGAAGTGCTAGATGAAAGCTTGCGAGCTCGGCCGGAATCCGAAATTGAGGAGATGTTGCAGACCTTAGGTGTGGCTTTGCTGAGTGTGAACTCAAGCCCAGATGACAGACCGACCATGAAAGATGTGGTAGCAATGATGAAGGAAATTAGGCAGGAGAGAGAGGAATGTGTGAAAGTTGACATGCTTCTTAATGCATCTTCTGCAAATGAGCAACAAGAAAGAAATCATCTCACTGAAGAACCAATGTCAATGATAAGCACCAGCAGCACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAAACACCAAAGTAA

Predicted protein sequences of Glyma18g38470

Limit To All Plant Sequences

>Glyma18g38470.1   sequence type=predicted peptide   gene model=Glyma18g38470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLVVEFLRELPMSMPRQALNNQNHNQMSRQAFITNHHHHLLHVLLFTLLVPISFAANDEVSALVSWMHSSSNTVPLAFSSWNPLDSNPCNWSYIKCSSASFVTEITIQNVELALPFPSKISSFPFLQKLVISGANLTGVISIDIGNCLELVVLDLSSNSLVGGIPSSIGRLRNLQNLSLNSNHLTGQIPSEIGDCVNLKTLDIFDNNLNGDLPVELGKLSNLEVIRAGGNSGIAGNIPDELGDCKNLSVLGLADTKISGSLPASLGKLSMLQTLSIYSTMLSGEIPPEIGNCSELVNLFLYENGLSGSLPREIGKLQKLEKMLLWQNSFVGGIPEEIGNCRSLKILDVSLNSFSGGIPQSLGKLSNLEELMLSNNNISGSIPKALSNLTNLIQLQLDTNQLSGSIPPELGSLTKLTMFFAWQNKLEGGIPSTLEGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGKCSSLIRLRLVDNRISGEIPKEIGFLNSLNFLDLSENHLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLDVLDLSMNNFSGEVPMSIGQLTSLLRVILSKNSFSGPIPSSLGQCSGLQLLDLSSNKFSGTIPPELLQIEALDISLNFSHNALSGVVPPEISSLNKLSVLDLSHNNLEGDLMAFSGLENLVSLNISFNKFTGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSNAAMTKMINGTNSKRSEIIKLAIGLLSALVVAMAIFGAVKVFRARKMIQADNDSEVGGDSWPWQFTPFQKVNFSVEQVFKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTSAARYDSQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHEQSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRHKRGGVEVLDESLRARPESEIEEMLQTLGVALLSVNSSPDDRPTMKDVVAMMKEIRQEREECVKVDMLLNASSANEQQERNHLTEEPMSMISTSSTNLHLHYSPHRPQTPK*

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