Glyma18g38440 - SoyBase

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Report for Sequence Feature Glyma18g38440

Feature Type:	gene_model
Chromosome:	Gm18
Start:	45937356
stop:	45940501
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38440

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G24660	AT	Annotation by Michelle Graham. TAIR10: transmembrane kinase-like 1 \| chr3:9003641-9005751 FORWARD LENGTH=674	SoyBase	E_val: 0	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF839	Panther		JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF07714	PFAM	Protein tyrosine kinase	JGI		ISS
UniRef100_B9S563	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serine/threonine-protein kinase PBS1, putative n=1 Tax=Ricinus communis RepID=B9S563_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI000233DFA1	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233DFA1 related cluster n=1 Tax=unknown RepID=UPI000233DFA1	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma18g38440

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma18g38440

Paralog	Evidence	Comments
Glyma08g47200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma18g38440 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.18g175700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma18g38440

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38440

Limit To All Plant Sequences

>Glyma18g38440.1   sequence type=CDS   gene model=Glyma18g38440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGTTTCTGAACCCTTTCTCTCTCCACATTCCCATGTCCTTGTTGTTCTTCTTCCTCTTCTTTTTTTGCTTCTGCAAAGCCAGTAGTACTACCACCTCCACCACAAAGTCACTGTCCCCCCCTTCTTCACCCTCCACTACTTCCTCCTCTGACGTTGAGCTTCTCTTGGGAAAGATCAAAGCTTCACTGCAAGGTAGTAACTCTGACAACCTTGTTTTGTCTTCATGGAACTCCTCCACCCCACTTTGTCAGTGGAAAGGCCTCATATGGGTCTTCTCCAATGGCACTCCTCTCTCATGCACTGACTTGTCCTCTCCTCAATGGACCAATCTCACACTCCTCAAAGACCCTTCTCTTCACTTGTTTTCCCTCCGGCTCCCTTCTGCAAACCTCTCTGGTTCCCTCCCTAGAGAGCTTGGAGGGTTCCCTATGCTCCAAAGTCTCTACCTTAACATTAACTCATTGGAGGGTACCATCCCTCTTGAGCTTGGTTATAGCTCCTCTCTCTCTGAGATTGATTTGGGTGACAATATGCTAGGTGGGGTTCTTCCACCTTCTATTTGGAACTTGTGTGAGAGGCTTGTTTCCCTTAGGCTCCACGGTAATTCTTTATCTGGGTTAGTTTCTGAGCCTGCATTGCCTAACTCTTCTTGCAAGAATCTGCAGGTGCTTGATTTGGGTGGCAACAAGTTCTCTGGGAGTTTCCCTGAGTTCATCACAAAGTTTGGTGGCCTAAAGCAGCTTGACTTGGGGAATAACATGTTTATGGGTGCAATTCCTCAAGGCCTAGCTGGGCTTAGTCTTGAAAAATTGAATCTTTCACACAATAACTTTAGTGGGGTTTTGCCTTTGTTTGGAGGAGAATCCAAGTTTGGTGTGGATGCTTTTGAGGGGAATAGCCCTAGCCTGTGTGGACCACCTCTGGGAAGCTGTGCTAGGACCTCTACACTGAGTTCTGGTGCTGTTGCTGGCATTGTTATTAGTCTGATGACAGGAGCTGTGGTTTTGGCTTCTTTGCTGATAGGGTATATGCAGAACAAGAAGAAGAAGGGGAGTGGGGAGAGTGAGGATGAGTTGAATGATGAAGAGGAAGATGATGAAGAGAATGGTGGTAATGCTATTGGTGGAGCTGGTGAGGGGAAGCTCATGTTATTTGCTGGAGGTGAGAATTTGACATTGGATGATGTGTTGAATGCAACTGGGCAGGTTTTGGAGAAGACTTGTTATGGGACGGCTTATAAGGCTAAGCTTGCTGATGGAGGCACCATTGCTTTGAGGCTGTTGAGAGAAGGTAGCTGCAAAGACAAGGCTTCTTGCTTGTCTGTTATAAAGCAATTGGGGAAAATTCGCCACGAGAATTTGATTCCTTTGAGAGCTTTCTATCAGGGGAAGAGAGGGGAGAAGCTCCTTATTTATGACTACCTGCCTCTCAGAACCCTTCATGATCTTTTACATGAAGCTAAAGCTGGAAAACCAGTGTTGAACTGGGCTAGGCGACACAAGATTGCGCTGGGCATAGCGAGAGGTCTAGCTTATCTTCACACAGGACTTGAAGTTCCTGTCACCCATGCAAACGTAAGGTCCAAGAATGTGCTTGTGGATGACTTCTTTACAGCCAGGCTCACCGATTTTGGTCTTGACAAGCTGATGATTCCTTCCATAGCCGACGAAATGGTAGCGCTTGCTAAGACGGACGGCTACAAGGCTCCTGAGCTTCAAAGAATGAAGAAATGCAACTCCAGGACTGATGTTTATGCATTCGGCATACTGCTGCTTGAAATCTTGATTGGGAAGAAGCCTGGGAAGAATGGAAGAAATGGCGAGTATGTGGACTTGCCTTCGATGGTGAAAGTGGCGGTTTTGGAGGAGACGACGATGGAAGTGTTTGATGTGGAGCTTTTGAAAGGGATAAGAAGCCCTATGGAAGATGGGTTGGTGCAGGCGCTGAAGCTGGCAATGGGGTGCTGTGCACCAGTGGCATCTGTTAGGCCAAGCATGGATGAAGTTGTGAGGCAGTTGGAGGAGAATAGACCAAGGAACAGGTCTGCATTATACAGCCCTACAGAAACAAGAAGTGGAAGTGTTACCCCATTTTGA

Predicted protein sequences of Glyma18g38440

Limit To All Plant Sequences

>Glyma18g38440.1   sequence type=predicted peptide   gene model=Glyma18g38440   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAFLNPFSLHIPMSLLFFFLFFFCFCKASSTTTSTTKSLSPPSSPSTTSSSDVELLLGKIKASLQGSNSDNLVLSSWNSSTPLCQWKGLIWVFSNGTPLSCTDLSSPQWTNLTLLKDPSLHLFSLRLPSANLSGSLPRELGGFPMLQSLYLNINSLEGTIPLELGYSSSLSEIDLGDNMLGGVLPPSIWNLCERLVSLRLHGNSLSGLVSEPALPNSSCKNLQVLDLGGNKFSGSFPEFITKFGGLKQLDLGNNMFMGAIPQGLAGLSLEKLNLSHNNFSGVLPLFGGESKFGVDAFEGNSPSLCGPPLGSCARTSTLSSGAVAGIVISLMTGAVVLASLLIGYMQNKKKKGSGESEDELNDEEEDDEENGGNAIGGAGEGKLMLFAGGENLTLDDVLNATGQVLEKTCYGTAYKAKLADGGTIALRLLREGSCKDKASCLSVIKQLGKIRHENLIPLRAFYQGKRGEKLLIYDYLPLRTLHDLLHEAKAGKPVLNWARRHKIALGIARGLAYLHTGLEVPVTHANVRSKNVLVDDFFTARLTDFGLDKLMIPSIADEMVALAKTDGYKAPELQRMKKCNSRTDVYAFGILLLEILIGKKPGKNGRNGEYVDLPSMVKVAVLEETTMEVFDVELLKGIRSPMEDGLVQALKLAMGCCAPVASVRPSMDEVVRQLEENRPRNRSALYSPTETRSGSVTPF*

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