Glyma18g38420 - SoyBase

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Report for Sequence Feature Glyma18g38420

Feature Type:	gene_model
Chromosome:	Gm18
Start:	45867830
stop:	45871349
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma18g38420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G04120	AT	Annotation by Michelle Graham. TAIR10: multidrug resistance-associated protein 5 \| chr1:1064848-1070396 REVERSE LENGTH=1514	SoyBase	E_val: 3.00E-25	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006810	GO-bp	Annotation by Michelle Graham. GO Biological Process: transport	SoyBase	N/A	ISS
GO:0006888	GO-bp	Annotation by Michelle Graham. GO Biological Process: ER to Golgi vesicle-mediated transport	SoyBase	N/A	ISS
GO:0009651	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to salt stress	SoyBase	N/A	ISS
GO:0030007	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular potassium ion homeostasis	SoyBase	N/A	ISS
GO:0043090	GO-bp	Annotation by Michelle Graham. GO Biological Process: amino acid import	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0000325	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type vacuole	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0008281	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sulfonylurea receptor activity	SoyBase	N/A	ISS
GO:0016887	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity	SoyBase	N/A	ISS
GO:0017111	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleoside-triphosphatase activity	SoyBase	N/A	ISS
GO:0042626	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATPase activity, coupled to transmembrane movement of substances	SoyBase	N/A	ISS
PTHR24223	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24223:SF20	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_B9HLA5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Multidrug resistance protein ABC transporter family (Fragment) n=1 Tax=Populus trichocarpa RepID=B9HLA5_POPTR	SoyBase	E_val: 1.00E-44	ISS
UniRef100_I1KRY8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KRY8_SOYBN	SoyBase	E_val: 2.00E-65	ISS

Expression Patterns of Glyma18g38420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38420 not represented in the dataset	Glyma18g38420 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments

References for Glyma18g38420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma18g38420

Limit To All Plant Sequences

>Glyma18g38420.1   sequence type=CDS   gene model=Glyma18g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CTCGCTCAGCGTGGCACTCCTCGCTTAGTGCGTTCAGATAGTGCGCTTAGCGAGCTCCTCTCGCTTAGCGCGTGCTGCTTCTGTTGGATCACGCGCTTAGCATGTGCTGCGCGCTTAGCGCACGCATCTCTCTCACTCGCACCCACTAACATTCTTCAACAATCGTGTCTCTCGCTGCTGGAAACCCTAAGCCCCAATCCAAACCCCACTCTCTCCCTCTCTCTTTGCCGCAAACGACACTTCTCCGGTGCGGCGCTGAGAAGGTCTCCGAGAAGGGCGAAAACCTCAAAAATACGTTTGTGTGGTTTGAAAGAAGGAGTGATTGCATTTCTACTCACTGCACTAGAGCCATCTGATTGCTTTCTGTTCTCTCCTACAAGTGGTGGTCTTAGTGCTTACTTTCCAAAAATGTGTGATAATCTTTATTGTGTTAAATCAAAAAAGAATATTGAACCATTATGTCAAAAGATGGATAAGAGGGAGAGTAGGATTGAAATGTGTGCATCCATAATGGAATTGATTATGACTGCATGTGTGTTGAAGTATATATACCTCCCTAAAATGATTTATTGCCTCTATGTGTTGAGTCAGGAAGCTTATAAAGGAGCACTTGTTCTGATTATTCTTCTATGCCAAATTCTCTTTCAAGTTATGCAGATGGGAAGCAATTATTGGATTTCATGGGCTACAAAGCAGAAAGGCAGGGTCAACAACAAACAACTTATGGGAACATTTGCTCTTCTATCTTTTGGTGGCACCATCTTCATACTTGGAAGGATTGTTTTAATGGCAGCTAATGCTATGGAAACTGCTCAACACCTTTTTCTTGGAATGATCACATCATTTTTCAGGGCACCTTCGTCAACGGATCAAAGTACTCCAGACACATACATACCATACAGATTAGAGGGACTAGTGTTTGCACTTATCCAGTTATTGAGTATCATTGTGCTAATGTCCCAAGTTGCATGGCAAGTCATTCTCCTCTTTTTCGTAAGAACTGTATCAAGCTTTGACAATGTACACAAACTAAATCATATCATTTTCCTGTCAAACATTAGCTCGTGTAACTTGTCATATCAATTTCCTCTTCAATTTGGTCTTCTATTTTGTACTTGCCATCTTGGCTACTCTTCCAAGGTCTACCATTTATCCAAGCTTGGCGGGTATGGTAGCTACTTATGGTTTGAACTTGAATGTCCTTCAGGCTTGAAGGCTGTTGATAATGATCGGGTTTTGGTCCTTGATGAAGATTGA

Predicted protein sequences of Glyma18g38420

Limit To All Plant Sequences

>Glyma18g38420.1   sequence type=predicted peptide   gene model=Glyma18g38420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
LAQRGTPRLVRSDSALSELLSLSACCFCWITRLACAARLAHASLSLAPTNILQQSCLSLLETLSPNPNPTLSLSLCRKRHFSGAALRRSPRRAKTSKIRLCGLKEGVIAFLLTALEPSDCFLFSPTSGGLSAYFPKMCDNLYCVKSKKNIEPLCQKMDKRESRIEMCASIMELIMTACVLKYIYLPKMIYCLYVLSQEAYKGALVLIILLCQILFQVMQMGSNYWISWATKQKGRVNNKQLMGTFALLSFGGTIFILGRIVLMAANAMETAQHLFLGMITSFFRAPSSTDQSTPDTYIPYRLEGLVFALIQLLSIIVLMSQVAWQVILLFFVRTVSSFDNVHKLNHIIFLSNISSCNLSYQFPLQFGLLFCTCHLGYSSKVYHLSKLGGYGSYLWFELECPSGLKAVDNDRVLVLDED*

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