Report for Sequence Feature Glyma18g38350
Feature Type: gene_model
Chromosome: Gm18
Start: 45764977
stop: 45769721
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g38350
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G30480 AT
Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:14897500-14898937 FORWARD LENGTH=277
SoyBase E_val: 3.00E-107 ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0051879 GO-mf
Annotation by Michelle Graham. GO Molecular Function: Hsp90 protein binding
SoyBase N/A ISS
KOG4234
KOG
TPR repeat-containing protein
JGI ISS
PTHR22904 Panther
CHAPERONE BINDING PROTEIN
JGI ISS
PTHR22904:SF60 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00515 PFAM
Tetratricopeptide repeat
JGI ISS
PF07719 PFAM
Tetratricopeptide repeat
JGI ISS
UniRef100_C6TEB0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Glycine max RepID=C6TEB0_SOYBN
SoyBase E_val: 0 ISS
UniRef100_G7L2C4 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Tetratricopeptide repeat protein n=1 Tax=Medicago truncatula RepID=G7L2C4_MEDTR
SoyBase E_val: 1.00E-131 ISS
Expression Patterns of Glyma18g38350
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g38350
Paralog Evidence Comments
Glyma08g47150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g38350 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g174600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g38350
Coding sequences of Glyma18g38350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g38350.1 sequence type=CDS gene model=Glyma18g38350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTGTTGATAGAGCATGAAGAGAGCAAGCAGAGAAACGCGAACCCCTCCAACGCCGCCAACGACGATTCCGACGGCTTCGAAACCGCCAGCGACACCGATCTGGCCGGTGAAGGCGACGACAGTGGGGCCGGCATCCCGGAAGAACAGAATCGCACCGAACAGAGTCATACCGAGAAGCAGACGGAGCAAGAGCCGGAACACGATGCTCCTCGGAGCAGCGAATCATCCGAGAACAATGCCCTGATCAGTGAAGAAGAATCGAGACAGAAAGCATTGAATCAAGCAAATGAAGCAAAGGTAGAAGGGAATAAGCTTTTTGTAGAAGGGAAGTATGAAGAGGCATTATTACAATATGAACTTGCTTTACAAGCAGCACCAGACATGCCTTCATCTGTGGAAATACGGTCAATATGCCATTCAAACCGTGGTGTGTGCTTTCTGAAACTGGGAAAATATGATAACACAATTAAAGAATGCACAAAAGCATTAGAATTGAATCCTGTGTACATTAAAGCTTTGGTAAGAAGAGGAGAAGCTCATGAAAAGCTTGAGCATTTTGAAGAGGCTATTGCTGATATGAAAAAGATCTTAGAAATTGATCTCTCAAATGATCAAGCTAGGAAAACCATTAGGCAGCTAGAGCCCCTTGCTGCAGAAAAACGGGAAAAGATGAAGGAGGAAATGATTGCAAAACTGAAAGACATGGGCAATTCTGTCCTGGGCCGCTTTGGGATGAGCGTAGACAACTTTAAAGCAGTCAAAGATCCAAACACTGGTTCCTATTCTATCTCATTCCAACGCTAA
Predicted protein sequences of Glyma18g38350
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g38350.1 sequence type=predicted peptide gene model=Glyma18g38350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVLIEHEESKQRNANPSNAANDDSDGFETASDTDLAGEGDDSGAGIPEEQNRTEQSHTEKQTEQEPEHDAPRSSESSENNALISEEESRQKALNQANEAKVEGNKLFVEGKYEEALLQYELALQAAPDMPSSVEIRSICHSNRGVCFLKLGKYDNTIKECTKALELNPVYIKALVRRGEAHEKLEHFEEAIADMKKILEIDLSNDQARKTIRQLEPLAAEKREKMKEEMIAKLKDMGNSVLGRFGMSVDNFKAVKDPNTGSYSISFQR*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
