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Report for Sequence Feature Glyma18g38291

Feature Type:gene_model
Chromosome:Gm18
Start:45718204
stop:45718776
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma18g38291
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67140AT Annotation by Michelle Graham. TAIR10: F-box/RNI-like superfamily protein | chr5:26794009-26795213 REVERSE LENGTH=228 SoyBaseE_val: 2.00E-29ISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF103Panther SUBFAMILY NOT NAMED JGI ISS
UniRef100_C6SYX3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYX3_SOYBN SoyBaseE_val: 8.00E-43ISS
UniRef100_G7K5B9UniRef Annotation by Michelle Graham. Most informative UniRef hit: F-box protein n=1 Tax=Medicago truncatula RepID=G7K5B9_MEDTR SoyBaseE_val: 1.00E-37ISS

Expression Patterns of Glyma18g38291
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma18g38291 not represented in the dataset
Glyma18g38291 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma18g38291 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma18g38291
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma18g38291
>Glyma18g38291.1   sequence type=CDS   gene model=Glyma18g38291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTAAGGCAGAGATTGATCGCTTGCCAATTGACTTGTTGGCTCATATTTTTGTTTTGTTCACTTCCTTCATTGATTTGGCTCATATACGAGTGGCAAGTGGTGTTTGCAAGAAATGGAAACAAGGGGTGAAGGAGTCTCTTGCTCGAAGACACAATCTTAGCTTTACCGGTTGGAAGATGGATGATGACTCCACTGCTCACCTTGTTTATCACGCCTACAACCTCACTAAACTAGACATAGCTTTGGAGATGGATTGTATATTTGAGTTTATAAATTTTGATTGTACGAGGAATGGAGTTGGTAATTACTTTTGGTGA
Predicted protein sequences of Glyma18g38291
>Glyma18g38291.1   sequence type=predicted peptide   gene model=Glyma18g38291   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVKAEIDRLPIDLLAHIFVLFTSFIDLAHIRVASGVCKKWKQGVKESLARRHNLSFTGWKMDDDSTAHLVYHAYNLTKLDIALEMDCIFEFINFDCTRNGVGNYFW*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
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