Report for Sequence Feature Glyma18g38130
Feature Type: gene_model
Chromosome: Gm18
Start: 45474902
stop: 45478085
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma18g38130
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT3G24750 AT
Annotation by Michelle Graham. TAIR10: unknown protein; Has 25 Blast hits to 25 proteins in 12 species: Archae - 0; Bacteria - 8; Metazoa - 2; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:9036735-9037564 FORWARD LENGTH=169
SoyBase E_val: 7.00E-16 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1N2C2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1N2C2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma18g38130
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma18g38130
Paralog Evidence Comments
Glyma08g47100 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma18g38130 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.18g173300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma18g38130
Coding sequences of Glyma18g38130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma18g38130.1 sequence type=CDS gene model=Glyma18g38130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCAGATTCTTCAATGGCTCTTTAGAAGGGCACATGAACAAGAAAGAAAGAGTAGCAACAACTTCAATCTCCCTCCCAAAAGGGAAGATATCAGTGAACAAAATGAAGGGAAAGAGATAAATCTGCTAAAGCGTGATAGATCATACAAAGGAACAAGAAGAAACAAATGGAGCAGTCCTGGTTGCAAGAACTTTAAGATATTCGCTTTTCTATATAGAAAAGACATTCCAAAAGCTTTCTTTTACAGCACCCTCAACTTGAAGAGATTAGGGAGCTTTAATAGAAAACAGTTTTTGTACTTCATGAAGATGAAGAGAGAAGAATCATCGTCCAGAGATGTTGGAAATGTTAACAAGGCAGATTCAGGTGGCCAACATGTTGGAAACAAGGTTTTGCCCATAACTGAGGCACCATTGTCATCCTCAGCTGAAAGAAGTGACCAATGTGATGCCACAGAAACTAAAGGTCAAACCAAAGGGGACAAGAAAAAGCCAATGTCGAGAATGAAAGAGCTACTTAGATGGGCTGCTTCTGCCAAGACAGAGAAAGGAGGGAAATTCAATGGGAGAAAGGTCTTAATGTTCAGAAGGCGTGGAACCCTGAAAGCAGTTCCAGATGATGACCATGGTTGCACTGACTCACCCAAGATCAGTTTCAGATGGGATGTGGAAAGTTGCTCCACCACTTCCTCTGTCTACTCTGCTATCTCAATAGCTTCCTCATCAAAAAATGAACAAAACCAAATTGCAACTTCCACTATATCCATCCCTCCTGAACACACTGGCCATAACAACAACACTAGTAGAAAAAAAGGAAACTGGATCACAACAGACTCTGAATTTGTGGTGCTGGAACTATAA
Predicted protein sequences of Glyma18g38130
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma18g38130.1 sequence type=predicted peptide gene model=Glyma18g38130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MQILQWLFRRAHEQERKSSNNFNLPPKREDISEQNEGKEINLLKRDRSYKGTRRNKWSSPGCKNFKIFAFLYRKDIPKAFFYSTLNLKRLGSFNRKQFLYFMKMKREESSSRDVGNVNKADSGGQHVGNKVLPITEAPLSSSAERSDQCDATETKGQTKGDKKKPMSRMKELLRWAASAKTEKGGKFNGRKVLMFRRRGTLKAVPDDDHGCTDSPKISFRWDVESCSTTSSVYSAISIASSSKNEQNQIATSTISIPPEHTGHNNNTSRKKGNWITTDSEFVVLEL*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
